1ZOQ


Conserved Protein Domain Family
IRF-3

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pfam10401: IRF-3 (this model, PSSM-Id:313600 is obsolete and has been replaced by 463076)
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Interferon-regulatory factor 3
This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha,beta-stimulated gene). IRF-3 preexists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection.
Statistics
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PSSM-Id: 313600
Aligned: 30 rows
Threshold Bit Score: 164.725
Created: 22-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1ZOQ_A         7 WEFEVTAFYRGRQVF-QQTISCPEGLRLVGSE-VGDRTL----------------PGWPVTLPDP--GMsLT----DRGv 62  human
Q5XIB0       197 WEFEVTAFYRGRQVF-QQTLFCPGGLRLVGST-SDNGTL----------------PWQPVTLPDP--EEfLT----DRLv 252 Norway rat
Q4H3B1       348 RQYSLRVKYQQHEVLeRDLMEMNLGYRIHYGD-PDQQCYlmkidepqrselivdfERPAISLPQV--KT-IG----GKG- 418 vase tunicate
Q4JF28       198 WEFEVTAFYRGCQVF-QQTVFCPGGLRLVGSE-AGDRML----------------PGQPIRLPDP--ATsLT----DKSv 253 cattle
Q90643       284 PLLDITIYYRGKMVY-QEQVDDSR-CVLAYQP-LDPAVA----------------EQRLVLFPSP--AS-LP----DPRq 337 chicken
Q90WI0       205 CWLHIRLYYCDVLVK-ELTTRTAEGCRIAS-----RTEGpyg-----------psCMEQIEFPPP--RA-LGgggwTVAv 264 chicken
ABY91290     193 CRLELRVFYYGRVVE-SVLSCSPDGCFLLQGCaPVGSERiyg-----------pcAATQLFFPPPnaAM-LP----T-Gi 254 zebrafish
CAG02387     254 CDLEISIHYRKKEML-KTTVRAPR-LQLHYHS-EAPELE----------------ANHHICFPPT--DG-LL----DHKq 307 spotted green p...
XP_009860696 311 lMYKVTLKYNGMVVK-SEKLSLAKGVRFMFGS-PLLQKNvveafrs---gerelvDLQTWEFPEQ--QM-LS----SNS- 377 vase tunicate
NP_001300708 170 lDLEISISYRRTEVL-KTRLCSSL-IHFFYQC-DPSEL-----------------RGEQIRFPTT--DC-LI----DVKq 222 zebrafish
1ZOQ_A        63 MSYVRHVLSCLGGGLALWRAGQ-WLWAQRLGHCHTYWAVSEELLPNsghGPDgEVPKDKEGGVFDLGPFIVDLITFTE-G 140 human
Q5XIB0       253 REYVRQVLKGLGKGLVLWRAGQ-CLWAQRLGHSHSFWALGEELLPDsgrGPDgEVPKDKNGVVFDLRPFVADLIAFME-G 330 Norway rat
Q4H3B1       419 TNGFQKVLKNTDAGLVFTQDEDhNLFCKRLCQSRVFAFSRYGEDNDd-kHPI-KLEREATVLLFNLNLFITDWINCLKtS 496 vase tunicate
Q4JF28       254 TDYVQRVLSCLGGGLALWRAGQ-WLCAQRLGHCHVYWAIGEELLPScghKPDgEVPKDREGGVFNLGPFITDLITFIE-G 331 cattle
Q90643       338 RRYTEDLLEV--AGLRLEQRAG-QLLATRLKKCKVFWALSQQLEGGe--PPLnLLHRDQETTIFDFRVFCTELRDFRDsR 412 chicken
Q90WI0       265 TEVLERLLPHLERGVLLWVAPE-GVFMKRQCQGRVYWNGPLAPHQD---WPN-KLEREKTYKLLDTQQFLEELRRYLS-H 338 chicken
ABY91290     255 CEAMTRLLPHLEKGVLLWVAPD-GLFIKRFCQGRVYWDGPLAEHRH---KPN-KLERERTCKLLDMKIFSQELLNYRQ-G 328 zebrafish
CAG02387     308 VEYTNRILNSIQKGLLLEVRDT-GIYATRQDRCHVFASTSDPSTAHl--EPS-KLPQNNMVELLSFAKYVHELKLFRE-N 382 spotted green p...
XP_009860696 378 -ANIDSILKSTDLGIVLQAQQN-GLTAKRLCQSQIFYFDQSNQGGH----SV-KLERKVAIEVLSHAKWVRSLLEQQR-G 449 vase tunicate
NP_001300708 223 IQYTKRILDSIQRGLQLEVNQY-GIYGFRQDKCKVFVSTSDPCEIQk-pEPR-KLQQNSKEQLLSFDKYIRDLLDFKE-N 298 zebrafish
1ZOQ_A       141 -SGRSPRY-ALWFCVGESWp-qDQPWTKRLVMVKVVPTCLRALVEMAR 185 human
Q5XIB0       331 -SRHSPRY-TLWFCVGESWp-qDQPWVKRLVMVKVVPTCLKELLEMAR 375 Norway rat
Q4H3B1       497 -RKREAIDhSIHLSLGKKP---ETRRCKTFIGLKLIPKVAETLLALLT 540 vase tunicate
Q4JF28       332 -SRRSPLY-TLWFCVGQSWp-qDQPWIKRLVMVKVVPMCLRVLVDIAR 376 cattle
Q90643       413 -RERSPDF-TIFLCFGQCFs-sTKPKESKLILVKLVPQFCEYWYEQVQ 457 chicken
Q90WI0       339 -GQPAPQY-QIHLCFGEEYptsTGRHLQKLIMAHVEPVFARELFHHAQ 384 chicken
ABY91290     329 -IGPEPQY-IVELCFGEEFpdpTQPKNKKLIRAQVTPMFAVDALRKLK 374 zebrafish
CAG02387     383 -NGGSPEY-TINMCFGEKFp-dGKALEKKLVTVKVVPLVCRHFYEMAH 427 spotted green pufferfish
XP_009860696 450 sNTISPNEgSVKLVIGTKPs---SIRSVGLVSLTIQSACADILIKQFS 494 vase tunicate
NP_001300708 299 -RGGSPDY-TIYLCFGEKLh-dGKPLEKKLITVKVVPLICRELHERAQ 343 zebrafish
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