Conserved Protein Domain Family
PIH1

?
pfam08190: PIH1 (this model, PSSM-Id:311900 is obsolete and has been replaced by 369738)
pre-RNA processing PIH1/Nop17
This domain is involved in pre-rRNA processing. It has has been shown to be required either for nucleolar retention or correct assembly of the box C/D snoRNP in Saccharomyces cerevisiae. The C-terminal region of this family has similarity to the CS domain pfam04969.
Statistics
?
PSSM-Id: 311900
Aligned: 15 rows
Threshold Bit Score: 315.474
Created: 22-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q4DT93        46 LRDIQMRiqeesrNAMKSKLEAIQSDEN-GQ-WMYVLPEPGFCVKCTTSGG-G---KIFLNVCQHERIAEPipmeeDEKT 119 Trypanosoma cruzi
A0DMA1        44 ISDPKNR------EEYDQYLKQLERESElPKgMKLIKPEPHFCVKTSICKEiTlqfKFFINICSTSVIDKP-----QSET 112 Paramecium tetr...
Q38DW7        46 LADLQKKiqeesmKSAKAKLEEIHSDEN-GQ-WMYILPEPGFCVKCKVAGG-G---KVFVNVCKHERIAEPipiddDNEA 119 Trypanosoma brucei
Q9VK57        30 INQYFGG------ADPEGS-GPQQKPPP-RD-SLIVQPTAGICVKSFKTNS-De--KFFINVCQAAEVPAPqdvteEELI 97  fruit fly
Q17BY1        23 VRDETEEqf---nSMFGPIVEQAQDISS-GR-SKVVKPTPGFCIKAFRKDT-Rn--KFFINVCQTDGIPAPediteDQLM 94  yellow fever mo...
Q292G3        50 VQDPENR------KIYEQEITQLEKERG-VD-IKFVHPKPGFVVKTSIDGE-L---KCFINIASSPEVARPn---sEVGM 114 Drosophila pseu...
Q7Q9F6        36 LRD--NR------KQYEDELSMLEAQRG-YD-VKFLKPSPGYVIKTIVDGK-G---KGFINVCQSELVQKPt---sTTGL 98  African malaria...
Q0IEW8        38 LKDPENR------KQYEEELKLMEAERG-YD-VKFIKPLPGYVIKTVVDGK-T---KAFVNVCHCDLVGKPs---sQCST 102 yellow fever mo...
CAG10513      40 LADPENR------RRYEEEIKILEQNRG-NT-IEFIHPEPVKALRTCMNGS-Q---KCYINICASEKIGKPs---cSPKV 104 spotted green p...
XP_001629864  38 ISDPENK------KRYEEEIRQMENERG-MD-VKFVNPEEGFVVKTTRETD-Gi--KAFVNICYNQHIEKAtfrmaEKGD 106 starlet sea ane...
Q4DT93       120 D------EIKFKIPLSCGQARPGTDKSGKPCKVYDVIVNPSTVQRCSKDHEFRCFVVSLCIHWIKQKC---EPTLNhEEY 190 Trypanosoma cruzi
A0DMA1       113 ItqngqtGQNWKIPYSIGKIRYDQDKKQNICNTVDVAFHPTTIGLCYKTPNFKNLVCSTALEASGKQLgerNEEIS-KDF 191 Paramecium tetr...
Q38DW7       120 -------EVKFRIPLSCGQARAESDKSGKPCKVYDVIVNPSTIHRCTQDHDFRCFVISLCIHWIQQKS---EPTLNlQEY 189 Trypanosoma brucei
Q9VK57        98 GilesttPGSYRVPMSISDPRFTKDRSDKTVDVCDIAINPKFLVKIQKSQLFKNFFMQIVIEAMSEKY---NVQLNmEKT 174 fruit fly
Q17BY1        95 AilndgtPSSFKIPMSITQPRFMKDHLDKQCQVCDIAVNSTFFKKIESGGLMRDFLITIVLEGIDSKY---NIALDeTDW 171 yellow fever mo...
Q292G3       115 NpetggrGLSWSIPMAQTGGRDDCDAKNNHCKVFDVVFHPDALHLSTRDSQFRKALIDTALDAVEREY---EVALDrANL 191 Drosophila pseu...
Q7Q9F6        99 Nedg-tkGLKWSVPYAQTQPRKDYDNKRVECTVYDVMFHPDALHLASKNEGFRKLLNDTSLDAVEQSF---KVRLDrANL 174 African malaria...
Q0IEW8       103 Nkrg-ekGLKWSIPYAQSQPRKDYDNKNVDCVVYDVVFHYDTLHLTKSNKNFRKLVTDTALDAVEGAF---HVSLDrVNL 178 yellow fever mo...
CAG10513     105 Ledg-rgTLCWALPHILHPKKQELYRKGHKVTIYDVVFHPETLDLASKNKTFLDMVHDTAIQGIQSAF---SVSLDrNGV 180 spotted green p...
XP_001629864 107 Gter-kkGQQWSIPYSLAQPRDDFDRAGKKCVTFDVVFHPDTYKKCTKMPQFKKMVIETALEGIERQL---NIKLNkKNL 182 starlet sea ane...
Q4DT93       191 RSM-NFKVKG-DLEPQRIRLSTAPKGANAMGdeirlpkDNSAALPPTTVGGRGGTGKLIQEVtnpa----iasdAVSSPQ 264 Trypanosoma cruzi
A0DMA1       192 KVLkHTKCKGgEPALLPVRIDKKGKLTNELD-------SRQGGQANAQTKLQKDINQMRDENekikeeeklkqqQQKEQQ 264 Paramecium tetr...
Q38DW7       190 RNM-SFRVKG-TLEPQRIRLSTTPKVANALGdeirlpaNATAASPVTNVGGRSGTGKLVQEI------------TDAPAP 255 Trypanosoma brucei
Q9VK57       175 IILnNRKFIG-TLVTHRVRNEDMKRAQSTSgi-----pAALN-SRDGGAVAPENSGKLVQEI------------DEKDAA 235 fruit fly
Q17BY1       172 RVLkNKKFVD-KLTAHNIQNRDVKTVLESYKyptesdlSKIKELETPQLGIDKPKKKLIEEI------------DPVTIK 238 yellow fever mo...
Q292G3       192 KYP-KLDYKG-IARPTVIRKLAANPTPEEQEphp--leHMYPTKPPASNSEPK--------------------------- 240 Drosophila pseu...
Q7Q9F6       175 RFP-KLQYKG-TPSSSVVREKLPHCDSLPKDel---fdKLLPPLPNVPAPGKTGSERTTKTK--------------NKEN 235 African malaria...
Q0IEW8       179 KFP-KLQYKG-VAKMTVIRQKLKNFETRRKDgl---idTLYRASEQSKITHDNSADKEN--------------------- 232 yellow fever mo...
CAG10513     181 KEI-RAKCKG-TPQTCVIRKPIPGYQEpp-------gkSDLPEFPYPDERRQPTSLQTDPTG------------P----- 234 spotted green p...
XP_001629864 183 KFP-KMKFKG-MKQATVIRNKSNENSFKKPNeg---itIGDKTIPYPYADQPTCANK-----------------QAHKSR 240 starlet sea ane...
Q4DT93       265 AAVPATSTTTTAAESSA-ASKEERiapslvKLQGEGIYDWSRHVKPvlNPYFRENIPATYAVEVCIPTVTSIAEVEVRIT 343 Trypanosoma cruzi
A0DMA1       265 AEEEEDIKKESDEIESTaVSRPKY------RFIYSYPVEYSDFLDS--RANMSIKLPNQLACDLKMQKVEAMKEIQLDLS 336 Paramecium tetr...
Q38DW7       256 AAAPAPPPTVNS------PSPPEEpkpsvmRVESEGIYDWSTHSKPtiNPYFRETVPAAYLVELHIPTVTTIAEVDVRVS 329 Trypanosoma brucei
Q9VK57       236 AIRKSRQSAGGG------FLDIQY----------------KLRGRV------RDESVDEIHAEIYLPNYVSSQEFSLLVG 287 fruit fly
Q17BY1       239 TMKDVKNKLSGKDEYVPdPTKVAI------SQAASKKPDCRLFREP------ASGRVKTLIGEFYLPECTSAKEITLDIG 306 yellow fever mo...
Q292G3       241 -----ILPMKTKAAPVPeFAVPKY------SIKQSHDVDLSEYTDEl-DAKLHVTVPRSLVVEIELPLLRSTAECQLDVT 308 Drosophila pseu...
Q7Q9F6       236 INRTAAVAAAAASPGNPfYTTPEY------KIVQCRDVEYGEMTNEl-DAKIDVTIPRELKVVITLPLLKSTAECALDVT 308 African malaria...
Q0IEW8       233 -----VNKQTFKSASQLeYTTPAY------KLIHRKEVEYHELTGEl-DAKLDAAIPKELVLVIELPLLKSANQCTLNVT 300 yellow fever mo...
CAG10513     235 -AVPTRSCAAGPRVQTKePAKPKY------TVRYRSYVDIQDFRRSr-NSA-QSPRPKEIVVTIDVPLLKEVTGARVEAR 305 spotted green p...
XP_001629864 241 TPGQITSKVKDNNADTRdPRNPEY------TILHRGIIDFQNFTNAr-DSC-TSTRPKELVIRIDLPDL-ALNHCKYRYS 311 starlet sea ane...
Q4DT93       344 PRSIEISYVDaedgAPFLS---IPLDYPIDEDAPNAKFVRKTHMLKMQLLV 391 Trypanosoma cruzi
A0DMA1       337 NQGLVLDVPN----KYFLD---IKLPYPIEQTEASAKFDAKSKTLKIRAPI 380 Paramecium tetraurelia
Q38DW7       330 PKRIELLYVDcedgVPFLT---VPLGYPIDEELQDAKFVRKTRTLKLKLRV 377 Trypanosoma brucei
Q9VK57       288 EDRIVVETRKy---GYVFN---KFVNYRLQQDRAQALFDKTTKMLHVRIPV 332 fruit fly
Q17BY1       307 EDRILLEARKk---GYLLD---AFVDYQIDGSRISAQFNTKTKMLNVIMPV 351 yellow fever mosquito
Q292G3       309 AKSVYLLSERlg-aKYRLK---LDLPFVVDDKAGNARFDTEKRRLSITLPV 355 Drosophila pseudoobscura pseudoobscura
Q7Q9F6       309 KTTLHLVSEKp--aRYKLE---LKLPYEVKESEGKATFNVEARSLTVTLPV 354 African malaria mosquito
Q0IEW8       301 SSEVHLISDSp--aKYKLE---VKLPYTVLEKNGSAKFNTDETTLTVLLPV 346 yellow fever mosquito
CAG10513     306 ERMLLLESEs---pAYRLE---LPLAYPVDEEKGEAKFSKQKGQLTVTLPV 350 spotted green pufferfish
XP_001629864 312 AFSRCC--------QFFLDichITLPYPIDENKGSAKFDKSKqqlvvtllv 354 starlet sea anemone
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap