Conserved Protein Domain Family
RIBIOP_C

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pfam04950: RIBIOP_C (this model, PSSM-Id:309880 is obsolete and has been replaced by 461497)
40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
RIBIOP_C is a family of eukaryotic proteins from the C-terminus of pre-rRNA-processing protein or ribosome biogenesis proteins BMS1 and TSR1. These proteins act, in the nucleolus, as a molecular switch during maturation of the 40S ribosomal subunit. This domain, domain IV of translation elongation factor selb, adopts the same fold as translation proteins such as domain II of GTP-elongation factor Tu proteins.
Statistics
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PSSM-Id: 309880
Aligned: 228 rows
Threshold Bit Score: 233.124
Created: 19-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q53MJ1           31 VETPLDVPAKRRFAKYRGLKSFRTSSWDPKES---LPQDYARIFAFDNFTRTQKH--VL-----A-----K--MAErde- 92   Japanese rice
117_pfamImport    1 KEEDEEKATEKRKEQKIKLKQRFDAEY----------------DETNEHYNNLKE--EL-----Dk---qA--QLNksvf 52  
Q9VVC9          685 RVEEENLTKAELMAKKLKLKAKFDAEYDNSGEgkgEEDNGRITGDH-SFYEDLKA--EA-----Qr---qS--ELNksef 751  fruit fly
11_pfamImport     1 QGGSLTEEQERLLQKKMAKKRAFDQDYd-------TGNVDGGKNTTFSYYHRLNR--QV-----Ee---kK--ERIneal 61  
Q384C0          744 GGKPLTEEQERLLQKRMAKKKAFNELYd-------M----GGKNNTYSHYHEMTR--EV-----Ea---kK--ERLdtal 800  Trypanosoma...
55_pfamImport     1 NDDILDELQKKRMEKKKSFDAQFDEKK-SSDKkegSAGVEEEEEDPITTIEKLKK--KL-----ReddpqM--ILNktef 70  
XP_003115778    595 dseadktrkQKRLEAKIKLKQRFNDDYDETCK---FYNKAKNELTEQ---ADLNR--QVfegmdE-----E--ERE---- 655  Caenorhabdi...
XP_003142541    576 tkrsEEEAAERRKIDKEKLKSRFNAEYDETNK---HYVQLKGELEEQS---KLNR--SIfeeldE-----T--ARQ---- 636  eye worm
CBY42708        160 sqEDEKTKKQKIWDKKQKLKEAFNQEYDDKGD------------PTAGFFEEWKK--ET-----E-----AiaARN---- 211  Oikopleura ...
XP_001867181    271 rieeknmsrtelmakkmklkakFDSEYDNPE------KDDQHIEGDHKYYEKLKAdaLR-----Q-----S--ELN---- 328  southern ho...
Q53MJ1           93 -----gtlKDCaq--------------rGSFVRLHLkNVPTEIASKLVHpsrrlPVVVSGLLQHESKISVLHFSIKKHDS 153  Japanese rice
117_pfamImport   53 e--nleesEREkleg----------fraGRYVRIEFdSVPCEFVThfd---psaPYIIGGILAGEQNIGVVQVRIKKHRW 117 
Q9VVC9          752 a--hldneFRIqieg----------yrpGLYVRLGFkQLPAEFIEnfd---asyPVLVGALNMTEENVGYVNCKVKKHRW 816  fruit fly
11_pfamImport    62 ddvgddmdKKIqlvg----------yfsGLYLRIVIdSVPVEFLKafd---pavPLIAGGINAGEDEFRIVQARIKRHRW 128 
Q384C0          801 qevghditNKIklvg----------hfsGLYVRFVLeNVPVEFVQlfd---psvPIIAGGVNAGEDQFQVVHAKLKRHRW 867  Trypanosoma...
55_pfamImport    71 q--nltreQREeieg----------ispGSYVRLEInSFPTEFIEnvn---fknPIIVGGMHPEECRMGLIKMRMKRHRW 135 
XP_003115778    656 --------KIEgf-------------raGRYVRIEIeSVPCEFVTHFDtt---aPYIIGGLLPGEQNMGVVQARVKRHRW 711  Caenorhabdi...
XP_003142541    637 --------QLEgf-------------rpGLYVRVEFeDVPVEFLQHFDpt---rPCIIGGLLTGEQNIGSVQVRVKKHRW 692  eye worm
CBY42708        212 --------KSEfsdlpddlrinyegyraGMYLRLEFeNFPAEFLENHEIk---yPMIVGGLLPSEQQRSTVQMRIKRHRW 280  Oikopleura ...
XP_001867181    329 --------KKEfsnldedirlniegyraGLYVRMNFtNVPYEFVEHFDpa---fPVLIGGLNMAEENVGFVSCKVKKHRW 397  southern ho...
Q53MJ1          154 YEAP-IKSKDSLIFNVGFRQFTARPLFSTDNInCNKHKMERFLHHGRF-SVASVYAPICFPPLPLIVLKSRDG------E 225  Japanese rice
117_pfamImport  118 HERL-LKSSDPLIMSVGWRRFQTMVIYSIQDh-NMRHRFLKYT-PQHMhCHGHLWGPITAQNTGFCAVQSVDEr-----A 189 
Q9VVC9          817 YKKI-LKTGDPLIISMGWRRFQTVAIYAKVEd-NFRQRYLKYT-PNHVtCSMTFWGPITPQNTGFLALQTVRQdqeemrR 893  fruit fly
11_pfamImport   129 FPKI-LKAQDPLLLSMGWRRFQTQPIFSTEDp-NGRCRYLKYT-PLHMhCMAAFYAPVAPPNTGFLAIPVRDPr-----V 200 
Q384C0          868 FPKI-LKAQDPLLLSMGWRRFQTQPILATEDp-NGRMRYLKYT-PMHMhCAAAFYAPVAPANTGFVAIPVREQr-----S 939  Trypanosoma...
55_pfamImport   136 YPRT-LKNKDPLVFSIGWRRFQSIPTYCMQDd-NGRHRQIKYT-PEYMhCIAAIYGPFVPQNTGVIAFQTLSEk-----V 207 
XP_003115778    712 FERT-LKSRDPLIISCGWRRFQTIAIYSVQDH-NMRLRFLKYT-PEHMhCHASFFGPICAQNTGLLAIQSIADk-----T 783  Caenorhabdi...
XP_003142541    693 YERI-LKSRDPLIISCGWRRFQTVVIYSIQDH-NMRQRFLKYT-PEHMfCQAVFWGPITAQNTGFLAVQSLNRd-----M 764  eye worm
CBY42708        281 FPRPvLKSRDPIIVSLGWRRFQTMPLYYMQDH-NMRQRFLKYT-PEHMhCWATALAPVAPQGTGFLAVQKMANg-----Q 353  Oikopleura ...
XP_001867181    398 YKKI-LKAGDPLIISLGWRRFQTIPIFAKVED-DLKHRYLKYTPNHVT-CSMTFWGPITPQNTGVLAIQSIAYd-----P 469  southern ho...
Q53MJ1          226 Q-----PA-IAAVGSLKSVDPDRIILKKIVLTGYPQRVSKLKAVVRYMFYNPEDVKWFKPVELWTKHGRRGRIKETV--- 296  Japanese rice
117_pfamImport  190 K-----GFrIAATGVVLNVDKASQVVKKLKLVGTPEKVFKKSAFIKGMFNSQLEVAKFEGAALRTVSGIRGQIKKAL--- 261 
Q9VVC9          894 L-----GFrIAATGCVTEVDKSSQIMKKLKLVGHPFKIYKKTAFVKDMFNSSLEVAKFEGAKIKTVSGIRGQIKKAH--- 965  fruit fly
11_pfamImport   201 S-----SFrIPCTGYTIGNDVSTPIVKKLKLTGTPAKVEKTTAFIKGMFSSDVEAAKFIGAKLRTVSGIRGIIKSVM--- 272 
Q384C0          940 P-----NFrISCTGYTVGNDLASNIVKKLKLIGTPQKIMKTTAFIKGMFNSDLEAAKYVGAKLKTVAGIRGIVKTVL--- 1011 Trypanosoma...
55_pfamImport   208 D-----TFrVSATGYVMEMDQDFSIVKKLKLLGYPKIVHKNTCIVTKMFTSDLEVAKYEGASLRTVSGLRGSVKKPFrgd 282 
XP_003115778    784 P-----GYrIVATGGVLDLDKSTQVVKKLKLIGHPEKIFKKTAFVKGMFNSQLEVAKFEGATIRTVAGIRGQIKKAI--- 855  Caenorhabdi...
XP_003142541    765 K-----GFrIAATGVVLNLDKAFQVVKKLKLIGHPYRIFKKSAFIKGMFNTVLEVAKFEGGIIRTVSGIRGQIKKAL--- 836  eye worm
CBY42708        354 P-----GFrICATGTVLHQDHSAKVVKKLKLIGYPMKIYKNTAFVKDMFTSQVEAAKFEGAQVRSVSGIRGIIKKSL--- 425  Oikopleura ...
XP_001867181    470 QetkrlGFrVAATGAVSESDKSAQIMKKLKLIGTPYKIYNKTAFIQGMFNSTLEVAKFEGAKIKTVSGIRGQIKKAV--- 546  southern ho...
Q53MJ1          297 -GT-H-GAMKCIFNSSVQQHDTVCMSLYKRAYP 326  Japanese rice
117_pfamImport  262 -STpP-GSFRATFEDKVLMRDIVFLRSWVVVPV 292 
Q9VVC9          966 -HTpE-GSYRATFEDKILLSDIVFCRTWFRVEV 996  fruit fly
11_pfamImport   273 -KGkQ-GLVRATFEDKLFPSDIVFISAWKSVEP 303 
Q384C0         1012 -KGkN-GLIRATFEDKIFPSDIVFCRAWKMVEP 1042 Trypanosoma brucei
55_pfamImport   283 kASp--GDFRATFEDKLIRGDIIFLRCWYALEL 313 
XP_003115778    856 -KA-PaGAFRATFEDKILMRDIVFLRSWVTVpi 886  Caenorhabditis remanei
XP_003142541    837 -HE-PtGAFRATFEDKILMSDIVFLRAWVSVpv 867  eye worm
CBY42708        426 -RKpE-GVVRITFEDRVQYSDIIFCKTWVnlai 456  Oikopleura dioica
XP_001867181    547 -PP-D-GSFRATFEDRIVLSDIVFCRTWFKVtv 576  southern house mosquito
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