Conserved Protein Domain Family
XerC

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COG0582: XerC (this model, PSSM-Id:30927 is obsolete and has been replaced by 223655)
Integrase [DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 30927
View PSSM: COG0582
Aligned: 370 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 7-Oct-2002
Updated: 7-Oct-2002
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
135956   126 TEYRTYLTKRGvriTTTNYKITANQEKTP-------VKANSYYVTNLKQFMEFYENFYFDGEEWDKDV----WDRrnlpl 194
16078900     -------------------------------------------------------------------------------- Bacillus subtilis
19703744   1 --------------MKYHTLHDTKHTFATllvnaevNKEIIIKMIGHKRYKTTLDIYVHKNYDDMKKAinki-------- 58  Fusobacterium nucle...
13540967   3 AAWALRNLRHYcklTRTDPKGILNRARANekdfryeLTDFVRKMEKEGKAGSYIARFKKVILSWLKFNgigl-------- 74  Thermoplasma volcanium
13540968   1 ----------------------------------------------------------MARILRKATSrgrvAIAi---- 18  Thermoplasma volcanium
13542316     -------------------------------------------------------------------------------- Thermoplasma volcanium
15838389     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15838900     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15839350   1 ---------------------------------------------------------MPTWQRLVEGIaqgrPAQg---- 19  Xylella fastidiosa ...
15801994     -------------------------------------------------------------------------------- Escherichia coli O1...
135956   195 pddkvnptqyeyTINFKGFRNTYFKQlvkrycklrlnvdSFSYVSDIAQRLKEFFNFLDMKFkqvqrvhqltrVEIEAYL 274
16078900     -------------------------------------------------------------------------------- Bacillus subtilis
19703744     -------------------------------------------------------------------------------- Fusobacterium nucle...
13540967     -------------------------------------------------------------------------------- Thermoplasma volcanium
13540968  19 -----------mAFSGLRPESLGDYEgt----------dCLRIGDLKEVKLSDEIQFDKIPA-----------KVMVKSK 66  Thermoplasma volcanium
13542316     -------------------------------------------------------------------------------- Thermoplasma volcanium
15838389     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15838900     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15839350  20 -----------dCEAIQPAPSKANHMl------------CFGR---RYDIRLRLAPT--RH------------------- 52  Xylella fastidiosa ...
15801994     -------------------------------------------------------------------------------- Escherichia coli O1...
135956   275 selnmmgikpstitGRISILEGLFSTLLRLEWDDVPSKILIysedypkiprakprfidefvleqlnshldklpeYIATMT 354
16078900   1 ----------------MHIVQPIRSLEKIQEVKQYLLNKNK---------------------------------RDYFLF 31  Bacillus subtilis
19703744     -------------------------------------------------------------------------------- Fusobacterium nucle...
13540967     -------------------------------------------------------------------------------- Thermoplasma volcanium
13540968  67 l-------------SKSRQQYFG-FIGEEGATYIKEYLEERglmnrkgfpesydlkalikfpyelksgkenidipqyshi 132 Thermoplasma volcanium
13542316     -------------------------------------------------------------------------------- Thermoplasma volcanium
15838389     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15838900     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15839350     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15801994     -------------------------------------------------------------------------------- Escherichia coli O1...
135956   355 MivqECGMRISELCTLKKGCLLEDKDGDFFLKYYQwKMKKEHIVPISKEVALLIKVREDKVSEEfpdseYLFPRKDGSPl 434
16078900  32 IfgiNSALRISDILPLQVKDVQNKDHLWATESQNE-KEKKDSYFRIAETGNIRVYERHEGKRISf--------------- 95  Bacillus subtilis
19703744     -------------------------------------------------------------------------------- Fusobacterium nucle...
13540967     -------------------------------------------------------------------------------- Thermoplasma volcanium
13540968 133 iydivpgkfktvenpdvlileglnvlqtrrtdtippasellvsdfldfsi------------------------------ 182 Thermoplasma volcanium
13542316     -------------------------------------------------------------------------------- Thermoplasma volcanium
15838389   1 ------------------------------------mqmTIKVMIAYTADIATELRSERmt-------aENIQGMLGHR- 36  Xylella fastidiosa ...
15838900     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15839350     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15801994   1 -------MREVEMKYPTGVENHGGKLRIWFVYKG--VRVRENLGFLTQQKTGALQVSYAP----------LFVTQ----- 56  Escherichia coli O1...
135956   435 kqetfrgeLNKLAYEQNIVDKsgeiyrfhaHAFrhtvGTRMIN----NGMpqhiVQKFLGHESPEMTS-RY--AHIFDET 507
16078900     -------------------------------------------------------------------------------- Bacillus subtilis
19703744     -------------------------------------------------------------------------------- Fusobacterium nucle...
13540967     -------------------------------------------------------------------------------- Thermoplasma volcanium
13540968     -------------------------------------------------------------------------------- Thermoplasma volcanium
13542316   1 ----------------------------------mqqLLSAVGykqeEID----KIDLTSVSNENFQQ------LLRDKV 36  Thermoplasma volcanium
15838389  37 --------AYSGITDVYAKYP---------PNI----------------------------------------------- 52  Xylella fastidiosa ...
15838900   1 -----------------------------------------------matlrrtFKGCLRHRAYSGITgVYakYRRDYYM 33  Xylella fastidiosa ...
15839350     -------------------------------------------------------------------------------- Xylella fastidiosa ...
15801994     -------------------------------------------------------------------------------- Escherichia coli O1...
135956   508 LKNEFTKFQEKLVTN 522
16078900     --------------- Bacillus subtilis
19703744     --------------- Fusobacterium nucleatum subsp. nucleatum ATCC 25586
13540967     --------------- Thermoplasma volcanium
13540968     --------------- Thermoplasma volcanium
13542316  37 GGKMTENGAKQKVIP 51  Thermoplasma volcanium
15838389     --------------- Xylella fastidiosa 9a5c
15838900  34 VDVVSAIDAYMGQLR 48  Xylella fastidiosa 9a5c
15839350     --------------- Xylella fastidiosa 9a5c
15801994     --------------- Escherichia coli O157:H7 EDL933
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