1KK3,1EFG,1F60,1G7R,1G7S,1G7S,1MJ1,1N0V,1R5O,1XE1,1ZO1,1ZUN,2H5E,2YWE,3J36,1S0U,1SKQ,1WDT,1XB2,2AHO,3WBI,4UPY,3WND,4ZCM


Conserved Protein Domain Family
Translation_Factor_II_like

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cd01342: Translation_Factor_II_like 
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Domain II of Elongation factor Tu (EF-Tu)-like proteins
Elongation factor Tu consists of three structural domains. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E. coli IF-2 to 30S subunits.
Statistics
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PSSM-Id: 293888
Aligned: 30 rows
Threshold Bit Score: 44.5627
Created: 12-Dec-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1KK3_A 209 PKMLV--LRSFDvnkpgtppeklvGGVLGGSIVqGKLKVGDEIEirpgvpyeehgrikyepiTTEIvsLQAGg------- 279 Pyrococcus abyssi
1G7R_A 464 ASIRLipKLVFRqs---------kPAIGGVEVLtGVIRQGYPLXndd------------getVGTVesXQDKg------- 515 Methanothermobacter t...
1G7S_A 232 ARGTI--LEVKEet--------glGMTIDAVIYdGILRKDDTIAmmts----------kdviSTRIrsLLKPrpleemre 291 Methanothermobacter t...
1G7S_A 464 ASIRLipKLVFRqs---------kPAIGGVEVLtGVIRQGYPLMndd------------getVGTVesMQDKg------- 515 Methanothermobacter t...
1ZO1_I 412 EVRDV--FKSPKf-----------GAIAGCMVTeGVVKRHNPIRvlrdn---------vviyEGELesLRRFk------- 462 Escherichia coli
3J36_1 249 LCGQV--FKIEYse--------krRRFVYVRIYsGTLHLRDVIRis---------------eKEKIk-ITEMyvp----- 297 Campylobacter jejuni ...
1S0U_A 207 PRMYV--ARSFDinkpgteikdlkGGVLGGAIIqGVFKVGDEIEirpgikvtegnktfwkplTTKIvsLAAGn------- 277 Methanocaldococcus ja...
2AHO_A 212 PVMLV--IRSFDvnkpgtqfnelkGGVIGGSIIqGLFKVDQEIKvlpglrvekqgkvsyepiFTKIssIRFGd------- 282 Sulfolobus solfataricus
3WBI_A 470 CVLQT--LQIINkr---------gPMIIGVDVLeGTLRVGTPICavktdptt---kerqtliLGKVisLEINh------- 528 Saccharomyces cerevis...
4UPY_B 499 CKMKIlpQYIFNsr---------dPIVMGVTVEaGQVKQGTPMCvpsk----------nfvdIGIVtsIEVNh------- 552 rabbit
1KK3_A 280 -----QFVEEAY---PGGLVGVgtkldpy----ltkgdlmAGNVVG 313 Pyrococcus abyssi
1G7R_A 516 -----ENLKSAS---RGQKVAXaikdav------ygktihEGDTLY 547 Methanothermobacter thermautotrophicus
1G7S_A 292 srkkfQKVDEVV---AAAGIKIvapgi---------ddvmAGSPLR 325 Methanothermobacter thermautotrophicus
1G7S_A 516 -----ENLKSAS---RGQKVAMaikdav------ygktihEGDTLY 547 Methanothermobacter thermautotrophicus
1ZO1_I 463 -----DDVNEVR---NGMECGIgvkny---------ndvrTGDVIE 491 Escherichia coli
3J36_1 298 ---tnGELYSSD---TACSGDIvilp----------ndvlQLNSIL 327 Campylobacter jejuni subsp. jejuni 81-176
1S0U_A 278 -----TILRKAH---PGGLIGVgttldpy----ltksdalTGSVVG 311 Methanocaldococcus jannaschii
2AHO_A 283 -----EEFKEAK---PGGLVAIgtyldps----ltkadnlLGSIIT 316 Sulfolobus solfataricus
3WBI_A 529 -----QPVQEVKkgqTAAGVAVrledpsgqq-piwgrhvdENDTLY 568 Saccharomyces cerevisiae S288c
4UPY_B 553 -----KQVDVAK---KGQEVCVkiepipgespkmfgrhfeATDILV 590 rabbit
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