Conserved Protein Domain Family
HTH_19

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pfam12844: HTH_19 (this model, PSSM-Id:289604 is obsolete and has been replaced by 463728)
Helix-turn-helix domain
Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.
Statistics
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PSSM-Id: 289604
Aligned: 148 rows
Threshold Bit Score: 27.5444
Created: 28-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q2SLS3        18 AQRLKELRSHFGY-T---QQKVVDgvnellpLIQHRphplcRSRYAKWELNnRTeMPDYPELlALCHYFEQEPYYLLTGV 93  Hahella chejuen...
Q4UJH7         4 GQNLQKFLTQK-------ISDMKIkkkdfimKCGIK-----QPVFNKILDG-SLtNPKLTTItKLADFCNASIDEILGRA 70  Rickettsia felis
Q3DK18        13 SKNLAFYMERKRV-D---RNTLCA-------DLGLK-----YTTVRDWLKG-IT-YPRIGKIeLLAEYFSINKSDLIEEH 74  Streptococcus a...
WP_008402347  17 GKQIGRLIDKGNI-S---DKHLGE-------MIGVS-----VQSINKWRHS-HC-LPDIENLfLLGQILGAKVEDFFIFR 78  Clostridium sp....
WP_022059662  22 GNNMKDIRCNSRSsKftvKYVVSEinrvlpeELQIT-----TGLYYKWESE-ER-MPTARHIpAIAYALGVSEAALFHWQ 94  Coprococcus
WP_007713336   7 AKRITQLRLKKNI-A---EHRMSL-------DLGHS-----RSYMQGISSG-RA-FPSMTEFlAICEYLGVTPRDFFEEE 68  Clostridium asp...
EDO59495      11 RNRITQLRLQKGV-S---EYQMSY-------DLGHS-----RSYMYNISSG-IA-LPPMLEFlQICEYFGITPAQFFDES 72  Clostridium lep...
WP_003533287  12 AARVQQLRSQKNI-S---ARKMSL-------SIGQN-----EGYITQIENK-QN-LPSMEGFlYICRYLEITPEEFFASD 73  Clostridiales
WP_044922787  11 ANNIRYYMNIHSV-S---QTEICN-------TLGFK-----MPTFSDWVNA-KT-YPRIDKIeLMANYFGVTKADLVEDH 72  Eubacterium hallii
WP_009832679   7 ADNLRLLCNYKKS-----ISEVCR-------ELEIN-----RQQFNKYLSA-KT-TPSGNNLrRICDYFGLEEHEIYLPH 67  Marinomonas sp....
Q2SLS3        94 NG 95  Hahella chejuensis KCTC 2396
Q4UJH7        71 PK 72  Rickettsia felis
Q3DK18        75 ST 76  Streptococcus agalactiae 515
WP_008402347  79 EI 80  Clostridium sp. L2-50
WP_022059662  95 TF 96  Coprococcus
WP_007713336  69 NE 70  Clostridium asparagiforme
EDO59495      73 LD 74  Clostridium leptum DSM 753
WP_003533287  74 NQ 75  Clostridiales
WP_044922787  73 SS 74  Eubacterium hallii
WP_009832679  68 DE 69  Marinomonas sp. MED121
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