Conserved Protein Domain Family
NMD3

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pfam04981: NMD3 (this model, PSSM-Id:282790 is obsolete and has been replaced by 461505)
NMD3 family
The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway.
Statistics
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PSSM-Id: 282790
Aligned: 203 rows
Threshold Bit Score: 139.31
Created: 26-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5JGP6         6 CYRCG---I---SEregG---P--LIEGLCQVCYRKE-NPVLL-IENE-InTELCQNCGSYKKrgvWV---Dph--sYEL 66  Thermococcus ko...
Q9Y9F4         7 CASCG---R---GS---E---V--LLRGLCPECFDRR-YGVVE-GLPWeLvVDVCTSCGRVRIghkWL---EyataeEAV 67  Aeropyrum pernix
WP_014026906   9 CIRCG---R---RIaasE---P--VIDGMCLECFLEE-RKLVE-IPGR-LdFEYCRSCGAIRYgyrWVeqlPl---eEAS 71  Pyrolobus fumarii
WP_011839391   5 CVRCG---RrvsED---E---P--LINGYCIDCYLKY-KGIFV-TKPV-LnITICPRCGSWMYrgeWR---Dp----LPL 63  Staphylothermus...
WP_012608752   7 CVKCG---R---EFk-qE---D--LINSLCVNCYLKY-HGVFK-ETPH-VeLTICPKCGSWYFkgaW----Hp---sLDI 64  Desulfurococcus...
WP_013129831   4 CVRCG---K---EVs-dE---E--IVGNYCVDCYVKH-LTPFK-DKPR-LeVMVCPKCGAWFYkgeWN---Hp----LEE 61  Thermosphaera a...
WP_011838704   5 CIYCGaedT---PD---N---P--VVEGVCLRCRIKR-GEIIEqVKRE-IrVDFCKVCGAVRIgykWI---DtngfnEAL 68  Staphylothermus...
WP_014737069   4 CLNCG---R---EVs-dE---D--YVNGYCIDCFRKIgNPFTK-QVS--LeLKVCSRCGSIFYkgeWH------------ 56  Thermogladius c...
WP_014557958   5 CPICG---R---EE---SknlP--FVGGICVECYLNK-NPL---EIKA-ItLNKCKICGKIRYkndWI---Fa------N 59  Fervidicoccus f...
WP_011822386  10 CARCG---K---PL---T---PgdSVGPFCLDCYVEM-FKLLC-VPER-VrFDYCKYCGAYRIghrWQ-----------S 63  Hyperthermus bu...
Q5JGP6        67 EELIFEVAENAllEALEdsfsdkirEYE---VVSP---EEL--EETEEIpvgraivsfepvdyhieyfpaiityE-VRVK 137 Thermococcus ko...
Q9Y9F4        68 GLMLSSMSLKPv---------------Hp--VERVeleDWAl-ETRLDW-------------------------R-TRVR 103 Aeropyrum pernix
WP_014026906  72 RRYLELYLs----ERVKpaha-lveDVKi--VNIEpl--qYp-SWRSVY-------------------------R-VVVE 115 Pyrolobus fumarii
WP_011839391  64 REIIRRILISEayRFIDrqhv-nllDATi--LSEPykiNES--QYAVKA-------------------------L-LHVV 112 Staphylothermus...
WP_012608752  65 REVIRRELLADlhRFLyeni--sviEVDv--VSDIykiN-Ag-EYGVKA-------------------------I-FTM- 111 Desulfurococcus...
WP_013129831  62 NEVLRRIAIWGskRFLReev--evlDVSv--VKSLhkiSASe-HG---V-------------------------T-LNYQ 107 Thermosphaera a...
WP_011838704  69 HHIVYNQLKELvkPGIGvddl-ridGYEl--VTSA--------SWRTVV-------------------------R-VYFR 111 Staphylothermus...
WP_014737069  57 QDSMENIVRRYllDNq--------aKYMi--ASAElisVEPsgEPRESA-------------------------KgVYVQ 101 Thermogladius c...
WP_014557958  60 ENFYSEIFAKEveKNNKkkfiqfglDLKa--V-----------PYKEKV-------------------------L-VTVQ 100 Fervidicoccus f...
WP_011822386  64 GGELEEAVQRFveEVAGgvkp-crpEVRgfsVEGVeplTKP--SWRTIY-------------------------A-IRYS 114 Hyperthermus bu...
Q5JGP6       138 ARThelqrElH---D----ERKKVTVYVRQTVCPRCQKFLGGYFEAILQVRA--EdrplteEERKAIGKLVEEKVdeimR 208 Thermococcus ko...
Q9Y9F4       104 LRFr---aNyR---DtlfrVSRVIVLRLNPSTCPLCIVRRSGEYDTLVQVRG--Y----------RAGEAVEKTL----N 161 Aeropyrum pernix
WP_014026906 116 ARLk-----gV---EepvrQEYVVEVRAVPSLCPACKNDRGGDYNVLVQVRG--Ri-------dAKLVEVLGRIL----D 174 Pyrolobus fumarii
WP_011839391 113 IEEyyp-----------lnLEKEIVLNINRKVCPKCLAYAGKSHRALVQIRS--Vng---sFSREE-EKIINKAI----S 171 Staphylothermus...
WP_012608752 112 -EVd---gR-H---VvkvnQVVIT--KLRYRTCDKCMRRTTGSHKVLVQVRF--EplenieGLRHEVMELLRDL------ 173 Desulfurococcus...
WP_013129831 108 LLIk---gIhp------vnFELEVPVRITYKPCPSCLARAGGSHKALVQVR---Veg---eVDIEELAEEVEELL----V 168 Thermosphaera a...
WP_011838704 112 G-Iy---gG-K---EfvypLDFIV--YLNPTKCPRCKMIESGEFEAVVQIRd---------VHVKDLEKALEKIF----S 168 Staphylothermus...
WP_014737069 102 NWLf---gI-VlnkKhfvqFNQDVRISVSRTICPRCLARASRKISAVVQVRG---------VNAQAHRGLVEGVI----M 164 Thermogladius c...
WP_014557958 101 NEIg---kY-E---Tyl---dpIIDYK--FTICPQCLARKAGSYDSVIQIRGtnKld---fEDKKIIMNLIEKLPy---- 161 Fervidicoccus f...
WP_011822386 115 IQVq-----gV---DkpisQTYRVEVRASPTICPTCKDVRGGEYNVLLQVRGik------pAELAR---LLGPLL----D 173 Hyperthermus bu...
Q5JGP6       209 K--DRM-GF-IQDTIEKEEGLDFYMGSTSAARKLAQAIKERFGGKI-SEAYELVGMDRQTSREVYRTSVSVRI 276 Thermococcus kodakaren...
Q9Y9F4       162 Sl-DPR-EA-PIDVVPVRGGVDVYFHHRGAAARFVSRLASTARVRVsRVEHEHVGTSSL-GRRRSRKTILVRL 230 Aeropyrum pernix
WP_014026906 175 Sg-RVA-PW-VVDIIEDKRGIDILLRDRGAASRIVSELSKYFVVDV-KRSAETVGM-TSTGIERRRLTISVRV 242 Pyrolobus fumarii
WP_011839391 172 Dp-GVA-GD-IVEIKKNKYGLDVKLLTSVAAKRLSTILSRLTGAKI-IESFKPVRYNPDKGRWSGITTLSVRL 240 Staphylothermus marinus
WP_012608752 174 ---EIG-ES-IIEVMELREGLDIKFEDIVSPRKYVNILVKKYGAKT-SESFKSTKYDFQEGKWSGVMTISVRI 240 Desulfurococcus kamcha...
WP_013129831 169 Ka-GLS-SS-VTEVEVVKEGVDVKFEDPVAARKLSSILSRKYGAST-AESFRSTRFDAHEGKWRGVVTLSVRI 237 Thermosphaera aggregans
WP_011838704 169 Rd-KRLrQD-LVDYIEVKNGIDIYFYNHGAARKLSRKLSNMLGLVI-KENYEVAGMR--SGKQRARLYVSLkp 236 Staphylothermus marinus
WP_014737069 165 SnpGYS-EY-LVDVEDAPNGFDIRFVDQLPARRLAYELARLLGGHV-KETFKSTRYDARKGVWQGIHTFSVRL 234 Thermogladius cellulol...
WP_014557958 162 ---DLK-QH-IVTITENKDWIDVEIVGHEKARLIASFLSEKLGGET-KQTFKLISTKK--GERNSRLTISLRI 226 Fervidicoccus fontis
WP_011822386 174 Ss-EQI-QNsIVDIVEYNNGVDFLLLDRGSAAKIIKEIKKKYIVVT-RTTGEDVGI-TSTGHMRRRTVIAVRV 242 Hyperthermus butylicus
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