Conserved Protein Domain Family
HA2
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pfam04408: HA2 (this model, PSSM-Id:282288 is obsolete and has been replaced by 461295)
Helicase associated domain (HA2)
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Links
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Statistics
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PSSM-Id: 282288
Aligned: 435 rows
Threshold Bit Score: 32.2563
Created: 26-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
A0BYG8        452 SLRQLYLIQAI----DEDGY------------------ITpMGYEMSR---YPLEPSYAKALItsklmecssemsaivai 506  Paramecium te...
XP_009526462  766 SLQRLEDMRALansgNGNQA------------------LTlLGWHLGHicsGGVAVQMAKLLLwghtfgcfdailqttct 827  Phytophthora ...
XP_006958217  490 ALDRLYLIGAI----NKKKE------------------LTsLGKVLLQ---LPIEAPIGKLILyatffrcldpalslaai 544  Wallemia sebi...
CCD76310      971 AIETLKEMDVLd--tFE--E------------------LTeLGYHICD---MPIPPRYAKMVLfsvvlkcldpiltiaci 1025 Schistosoma m...
GAA54121      459 tVQALMDMDALs--sPH--E------------------LTeLGYHTCD---IPIPPRYAKMVLvsvalkcldpiltiaci 513  Clonorchis si...
CDJ05366      843 SIRSLRIIDAVd--aSG--D------------------LTeLGSHMCD---LPLPPRYSKMVLvsialkcvdpiltiaci 897  Echinococcus ...
XP_001987022  682 TVQFLKKIDVL----DDMED------------------VTwLGCRLID---VPVPCQFGRTLIygilmqcldpiltivsa 736  Drosophila gr...
XP_001944198  745 ALEYLKTIEAMd--vNE--D------------------LTdLGFFMLD---LSIESHYAKSLVfaiflkcldpvltiisc 799  pea aphid
CCD77648      552 ALDILKSHGAI----IPQNNvl---------------tVTpLGQLLSD---IPVEFSIGRMLImasllrltnpvlslaag 609  Schistosoma m...
GAA49183      978 ALERLQSHGAL----ARQDNndgsrssapspnektmltVTpLGRLLAD---LPVEFSLGRMLImasllglvepvlslvag 1050 Clonorchis si...

A0BYG8        507 lstesiwq----------ritrvdvdgyqklqetqtqhadpagDHLS 543  Paramecium tetraurelia
XP_009526462  828 lsgyrdpfisflg-mspeeqrqvdaskkafarngsppslilqsDHFV 873  Phytophthora sojae
XP_006958217  545 ltnrdpf------------vapldlraeanaakqkwsqreyksDPFT 579  Wallemia sebi CBS 633.66
CCD76310     1026 ltytepfi-----------lprnaaerkdlmnirrslssnsysDHMV 1061 Schistosoma mansoni
GAA54121      514 ltyaepfh-----------aprnaferrewrnvrrkfasesysDHMM 549  Clonorchis sinensis
CDJ05366      898 lanenpft-----------lpssakerkeaqivrkkfsadslsDHMV 933  Echinococcus multilocularis
XP_001987022  737 msiddplsipfsedidslwdqytiyiqnrikgersrlasnqvsDHLI 783  Drosophila grimshawi
XP_001944198  800 lanrepfn-----------ltlnvnmktslgsirkklagdslsDHIV 835  pea aphid
CCD77648      610 maiqcpll----------pytafsgaeqtrridalaeyesdhgDAFT 646  Schistosoma mansoni
GAA49183     1051 msvqnplt----------pataftgterlrrtesladyesdhgDAFT 1087 Clonorchis sinensis
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