1I3Q,2F3I


Conserved Protein Domain Family
RNA_pol_Rpb8
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pfam03870: RNA_pol_Rpb8 (this model, PSSM-Id:281815 is obsolete and has been replaced by 461079)
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RNA polymerase Rpb8
Rpb8 is a subunit common to the three yeast RNA polymerases, pol I, II and III. Rpb8 interacts with the largest subunit Rpb1, and with Rpb3 and Rpb11, two smaller subunits.
Links
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Statistics
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PSSM-Id: 281815
Aligned: 127 rows
Threshold Bit Score: 122.546
Created: 15-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1I3Q_H         8 DIFQVSEV-DPGRYNKVCRIEAASTT---QDqCKLTLDINVELFPVAAQDSLTVTIASSLNL--Edtpandssa--trsw 79  baker's yeast
Q5CHU5        10 DRFVINSV-DSGKFDRIGRIRGRSVG---FD-ADLILDINNELFPVREKESLYIGLSSQVSV--Npndiv---------- 72  Cryptosporidium...
Q4YTQ9         9 DRFVISNV-DNSKFEKVSRIKAKSTG---YD-AELILDVHSELFKVEEKKAIYLALQDNFMG--Knddk----------- 70  Plasmodium berghei
KLU85962      13 gVFKVTHV-DQVKYDRVARITATSDSstaDP-MDMTLDINTELFPMSEGDGFRVVLATSLAL--Dgskdeekg----wrd 84  Magnaporthe poa...
XP_001910286  71 DNFRVHKL-SDKKYDRVDRIYATSED---KS-IEITLDINNELFPCKEGDELNMLIATSLHY--Dgtkddergw---rdv 140 Podospora anser...
XP_006693829  13 DHFRVERLs-ePKYDRVDRIYCKSID---GS-IDMSLDINKELFPCKVDDELHVALASSLHY--Dghrdedetrqgwrdl 85  Chaetomium ther...
XP_003347705  13 DDFKVERIsDP-KYDRVDRLYCTSTD---GQ-TSMQLDINKELFPVKVGDYLRIALATSLSL--Dgskddergw---rda 82  Sordaria macros...
XP_003883580   9 DRFEVRSV-DCSKFERVSRLKGKSSG---FD-ADIQLDVNSDLFPVKEKQRLYIGITNNLHStsDarkddta-------- 75  Neospora caninu...
XP_001610440  10 DRFVVRSI-DNSKFERVSRITAKSTG---FD-AELLLDINSDIFPVTVKSMLHILMTNNLLP--Sgsdvn---------- 72  Babesia bovis T2Bo
CDI82718       9 DRFTVRNV-DNSKFEHVSRIRAKSSG---LD-ADLILDVHNQLLPVAEKQGLHIGLTNSLGG--Pdrkd----------- 70  Eimeria acervulina

1I3Q_H        80 rppqaGDRSLADDYDYVMYGTAYKFEE-VSK-DLIAVYYSFGGLLMRLEGNYRNLNNLKQE-NAYLLIRR 146 baker's yeast
Q5CHU5        73 -wdnsGPQTLMDQYDYVMYGKIYRVEE-KQS-DRRSLYASFGGLLMSLTADKNLVGDFSLDmRLYCLVRR 139 Cryptosporidium hominis
Q4YTQ9        71 -tweqADNKSLNNIEYIMSGRIFKFEE-LSS-ERRTVYASYGGLMMALTADKQFIGDLEIDmKIYLLAKn 137 Plasmodium berghei
KLU85962      85 asklgGPPTLADNFDYVCYGKVYRFEDsKNG-EQIKAYISFGGLLMCLNGPYKKLTPLRVD-YVYLLVKg 152 Magnaporthe poae ATCC 64411
XP_001910286 141 akmgaSEGSLADQYDYVCYGKIYKFED-GEDgQTIKAYISFGGLLMSLVGPYKKLTPLRVE-YVYLLVRR 208 Podospora anserina S mat+
XP_006693829  86 akagsSESTLADMFDYVCYGKIYKFEDaEDG-QNIKAYISFGGLLMSLEGPYKKLTPLRVD-YVYLLVRR 153 Chaetomium thermophilum v...
XP_003347705  83 aklgsVEQTLADSYEYVCHGKVYKFED-GKDgQTIKAYMSYGGLLMALDGPYKKLTPLRVD-YVYLLatr 150 Sordaria macrospora k-hell
XP_003883580  76 --awtepaaYLKEYDYVMYGKIFRIEE-CSS-ERRTLYASFGGLLMALTADKHVVGDLELDmRIYILIRR 141 Neospora caninum Liverpool
XP_001610440  73 lsdysDLPSLMRDYEYAMYGKIFKFED-VSS-ETRTIYASFGGLLMSLTADKQVIADLDLDmRIYLMARR 140 Babesia bovis T2Bo
CDI82718      71 --daaADSQVLNGYDYVMYGKVFKLEE-TSS-ERRTLYLSFGGLLMSLAADKHVVGDLELDmRVYLLVKR 136 Eimeria acervulina
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