Conserved Protein Domain Family
LIM1_Paxillin_like

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cd09336: LIM1_Paxillin_like 
The first LIM domain of the paxillin like protein family
The first LIM domain of the paxillin like protein family: This family consists of paxillin, leupaxin, Hic-5 (ARA55), and other related proteins. There are four LIM domains in the C-terminal of the proteins and leucine-rich LD-motifs in the N-terminal region. Members of this family are adaptor proteins to recruit key components of signal-transduction machinery to specific sub-cellular locations. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. Paxillin serves as a platform for the recruitment of numerous regulatory and structural proteins that together control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression that are necessary for cell migration and survival. Leupaxin is a cytoskeleton adaptor protein, which is preferentially expressed in hematopoietic cells. It associates with focal adhesion kinases PYK2 and pp125FAK and identified to be a component of the osteoclast pososomal signaling complex. Hic-5 controls cell proliferation, migration and senescence by functioning as coactivator for steroid receptors such as androgen receptor, glucocorticoid receptor and progesterone receptor. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 259830
Aligned: 17 rows
Threshold Bit Score: 104.007
Created: 7-May-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                #  #  #  #                 #  #  
P49024       326 CGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGsrNFFERDGQPYCEKDYH 378 chicken
XP_002127320 225 CGACGKPVMGEVTTALGKVWHPEHFVCVVCDNDIGtkTFFERDGKPYCEKDYH 277 Ciona intestinalis
CAQ15443     182 CASCGKCIAGKMITALGQVWHPEHFVCSACREELGtcGFFERDGKPYCEKDYQ 234 zebrafish
XP_001633244  26 CAACNKPIIGQVCTALGKTWHPEHFACVACEAPLGtqNFFERDGKPYCERDYH 78  starlet sea anemone
NP_001133443 269 CSACQKPVVGQVVTALGRVWHPEHFVCSECETELGsrNFFEKDGQPYCESDYF 321 Atlantic salmon
XP_002168161 201 CGACDKPIIGQVCTALGKTWHPEHFTCYVCDTPLGtqTFFERDGKPFCEEDYH 253 green hydra
Q2TCH4       273 CESCQRPIAGQVVTALGHTWHPEHFVCAHCHTLIGtsNFFEKDGRPYCEKDYF 325 African clawed frog
CAF93402      25 CASCKKCIVGKMITALGQMWHPEHFLCVVCQTELSrtGFCERDGRPYCDKDYH 77  spotted green pufferfish
ACN11195     177 CASCAKVIVGKMITALGQVWHPEHFVCVECQAELGtsGFFEREGKAYCEKDYQ 229 Atlantic salmon
NP_001137467 157 CASCQKPIAGKVIHALGQSWHPEHFVCTHCKEEIGssPFFERSGLAYCPNDYH 209 human

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