1DZI,1Q0P,1AOX,1AOX,1JLM,1BHQ,1JEY,1M2O,1M2V,1M2V


Conserved Protein Domain Family
vWFA

?
cd00198: vWFA 
Click on image for an interactive view with Cn3D
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Statistics
?
PSSM-Id: 238119
Aligned: 165 rows
Threshold Bit Score: 43.7086
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
metal
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:metal ion-dependent adhesion site (MIDAS)
Evidence:
  • Comment:divalent cations are bound by the MIDAS motif
  • Structure:1DZI; integrin alpha2 binds Co2+ (cobalt ion) that engages collagen (Glu residue)
  • Comment:1IDN_1 shows the metal free state
  • Structure:1BHQ_1 with Cd2+ (cadmium ion)
  • Structure:1AOX_A with Mg2+
  • Structure:1JLM with Mn2+

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                #                                                                        
1DZI_A          3 IDVVVVCDEsns-------iypWDAVKNFLEKFVQGldig-------ptktQVGLIQYAn-------NPRVVfnlnty-- 59    human
1M2O_A        122 PIFFFVVDLtse-------tenLDSLKESIITSLSLlpp----------naLIGLITYGn-------VVQLHdlssetid 177   Saccharomyce...
1M2V_A        122 PIFFFVVDLtse-------tenLDSLKESIITSLSLlpp----------naLIGLITYGn-------VVQLHdlssetid 177   Saccharomyce...
1M2V_B        304 ATYCFLIDVsqssi----ksglLATTINTLLQNLDSipnh-------dertRISILCVDn-------AIHYFkipldsen 365   Saccharomyce...
AAO51648     1647 LDLVFCIDStgsm------sgeIKEVKEKITSIVDRieka-------kvnvNVGLVFYNdhe--iiyLPTDKsp------ 1705  Dictyosteliu...
ZP_00010167    31 VEVAFVLDTtgsmsg--liegaKRKIWSIATTILDDnpd---------adiRMGLVAYRdi-----gDDYVVrsvdlt-- 92    Rhodopseudom...
P71762         97 AVVMLVIDVsqsmr---atdvePSRMVAAQEAAKQFadel-------tpgiNLGLIAYAg-------TATVLvsptt--- 156   Mycobacteriu...
NP_800965      85 QNRMLVLDMsrsmyasdikpnrLAQTRYKALDLLPKwk-----------egATGLIVYAg-------DAYSLspltt--- 143   Vibrio parah...
ZP_00057264    48 VDIVLCIDAtgsm------spiIDRVKESALRFHEDlrkvmaaksknidslRVRVIAYRdyycdapeEAMVTseffsl-- 119   Thermobifida...
T16580      12121 IDLLLVIDSsnni-----kvldYRVMKELIKNFLTEhfnlr------khqvRVGLVKYGd-------GAEIPvslgdy-- 12180 Caenorhabdit...
Feature 1                                                                                         
1DZI_A         60 ---------------------------------------------------ktkeeMIVATsqtsq-----------ygg 77    human
1M2O_A        178 rcnvfrgdreyqlealtemltgqkptgpggaashlpnamnkvtpfslnrfflpleqVEFKLnqllenlspdqwsvpaghr 257   Saccharomyce...
1M2V_A        178 rcnvfrgdreyqlealtemltgqkptgpggaashlpnamnkvtpfslnrfflpleqVEFKLnqllenlspdqwsvpaghr 257   Saccharomyce...
1M2V_B        366 neesadqinmmdi-----------------------adleepflprpnsmvvslkaCRQNIetlltkipq---ifqsnli 419   Saccharomyce...
AAO51648     1706 ------------------------------------------------------tiVYEFTddiplvkkni--gtikafg 1729  Dictyosteliu...
ZP_00010167    93 ---------------------------------------------------tdiqdLYGQLlqlqar---------gggd 112   Rhodopseudom...
P71762        157 ----------------------------------------------------nreaTKNALdklqfa---------drta 175   Mycobacteriu...
NP_800965     144 ----------------------------------------------------dastLAGIIenlspe---------lmpf 162   Vibrio parah...
ZP_00057264   120 --------------------------------------------------pqqaaeFSRFVngiear---------gggd 140   Thermobifida...
T16580      12181 ---------------------------------------------------dneddLVHRIsesrr------------lk 12197 Caenorhabdit...
Feature 1           #                                  #                                          
1DZI_A         78 dlTNTFGAIQYARKyaysaas--ggrrsatKVMVVVTDGeshdgs---------------------------mlkavIDQ 128   human
1M2O_A        258 plRATGSALNIASLllqgc------yknipARIILFASGpgtvapglivnselkdplrshhdidsdhaqhykkackfYNQ 331   Saccharomyce...
1M2V_A        258 plRATGSALNIASLllqgc------yknipARIILFASGpgtvapglivnselkdplrshhdidsdhaqhykkackfYNQ 331   Saccharomyce...
1M2V_B        420 tnFALGPALKSAYHlig----------gvgGKIIVVSGTlpnlgigklqrrnesgv----vntsketaqllscqdsfYKN 485   Saccharomyce...
AAO51648     1730 gnDHPEAVADGLYEvsklkf-----rsnasKICILITDApahgfdsklnetysed------yhpngcpcghdsielvRSL 1798  Dictyosteliu...
ZP_00010167   113 wpESVNEALDTAINklhwrq-----ggdtrRIVFLVGDApphmdyaq-----------------------dtkypetLAV 164   Rhodopseudom...
P71762        176 tgEAIFTALQAIATvgavigg---gdtpppARIVLFSDGketmptnpd---------------------npkgaytaART 231   Mycobacteriu...
NP_800965     163 qgSNLPAAIELSLSqfsqa-------ganqGDIVVLADDlddse-----------------------------larsLDL 206   Vibrio parah...
ZP_00057264   141 epETGLEALALAMRsdwdtk-----srkrrQIIVVWTDAsvh---------------------------------plEKN 182   Thermobifida...
T16580      12198 grAQLGAGLREALDelsisgvdgvpqivliVKNGKASDDys----------------------------------saVKS 12243 Caenorhabdit...
Feature 1                                                                              
1DZI_A        129 CNhd----nILRFGIAvlgylnrn------------aldtknlIKEIKAIasip---------teryFF 172   human
1M2O_A        332 IAqrvaangHTVDIFAgcy---------------------dqiGMSEMKQltds---------tggvLL 370   Saccharomyces cerevisiae
1M2V_A        332 IAqrvaangHTVDIFAgcy---------------------dqiGMSEMKQltds---------tggvLL 370   Saccharomyces cerevisiae
1M2V_B        486 FTidcskvqITVDLFLase---------------------dymDVASLSNlsrf---------tagqTH 524   Saccharomyces cerevisiae
AAO51648     1799 VRr-----gITFYTVScrpt--------------------pnsSDYLNAIasis---------egkcVN 1833  Dictyostelium discoideum
ZP_00010167   165 ARqk----dIIVNAVQagda--------------------rdtARVWHEIadggrgryipipqdggqIV 209   Rhodopseudomonas palustris
P71762        232 AKdq----gVPISTISfg------------------------tPYGFVEIndqr----------qpvPV 262   Mycobacterium tuberculosis
NP_800965     207 VKgk----nIRVSVLAigtangapialpdgsllkttqgstvvaKTHLKNLqtlan-------ktggmFV 264   Vibrio parahaemolyticus...
ZP_00057264   183 AGd-----kPDGYPQDip-----------------------edFDELTDMwe-------------gqEY 210   Thermobifida fusca
T16580      12244 LKae---rnVTVFVVDagddesq--------------qqnselTEEDKTIvisq---------wrgaDS 12286 Caenorhabditis elegans

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap