Conserved Protein Domain Family
TFB4

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COG5242: TFB4 
RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 227567
Aligned: 3 rows
Threshold Bit Score: 294.644
Threshold Setting Gi: 19074510
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6325313    1 MDAISdpTFKHARSrKQVTEES---PSLLTVIIEIAPKLWTTFDeegnEKGSIIKVLEALIVFLNAHLAFNSANKVAVIA 77  baker's yeast
19074510   1 --------------------------MILFLLIDLEKENWELTT--------RDLF-NDIVVFLNAYHKSSRNNRVVVVS 45  Encephalitozoon cun...
19112324   1 MDEFQ--TLKQNAS-WDISEDAndtPSLLVVILDANPASWYSLS----KKVPVSKVLADITVFLNAHLAFHHDNRVAVLA 73  fission yeast
19074510   1 --------------------------MILFLLIDLEKENWELTT--------RDLF-NDIVVFLNAYHKSSRNNRVVVVS 45  Encephalitozoon cun...
19112324   1 MDEFQ--TLKQNAS-WDISEDAndtPSLLVVILDANPASWYSLS----KKVPVSKVLADITVFLNAHLAFHHDNRVAVLA 73  fission yeast
6325313   78 AYSQGIKYLYPESTSALKASESENkTRsdlkiiNSDMYRRFRNVDETLVEEIYKLFELEKKqieqNSQRSTLAGAMSAGL 157 baker's yeast
19074510  46 G----KTVLFDSSES--------------------------------DITEIYRIIEHPHG--------YDVG---DLGY 78  Encephalitozoon cun...
19112324  74 SHSDKVEYLYPSIAPEQKVAEVDP-TK------EANTYRKFREVDDLVLSGMKRLMSSTDK----VSRKTMISGALSRAL 142 fission yeast
19074510  46 G----KTVLFDSSES--------------------------------DITEIYRIIEHPHG--------YDVG---DLGY 78  Encephalitozoon cun...
19112324  74 SHSDKVEYLYPSIAPEQKVAEVDP-TK------EANTYRKFREVDDLVLSGMKRLMSSTDK----VSRKTMISGALSRAL 142 fission yeast
6325313  158 TYVNRISKEsvtTSLKSRLLVLTCgSGssKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSkeSTFLQQTTDATNGVYLH 237 baker's yeast
19074510  79 ALCLHRDEE-------SQIVIFTL--G--RERKDEYLRYLKCMFAAQRFGIRVSAFSLFEN---KTILQCCASTGGDYST 144 Encephalitozoon cun...
19112324 143 AYINQVQNK---NTLRSRILIFSL-TG---DVALQYIPTMNCIFCAQKKNIPINVCNIEGG--TLFLEQAADATGGIYLK 213 fission yeast
19074510  79 ALCLHRDEE-------SQIVIFTL--G--RERKDEYLRYLKCMFAAQRFGIRVSAFSLFEN---KTILQCCASTGGDYST 144 Encephalitozoon cun...
19112324 143 AYINQVQNK---NTLRSRILIFSL-TG---DVALQYIPTMNCIFCAQKKNIPINVCNIEGG--TLFLEQAADATGGIYLK 213 fission yeast
6325313  238 VESTEGLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLsiIPPGNKCPACDSQFDehvi 317 baker's yeast
19074510 145 SED--GCLRFLLSLLGTRGEPKPLG---------FPATCYCHNRQVLLGLVCPICLSVF--CRFVPVCKKCKSKFS---- 207 Encephalitozoon cun...
19112324 214 VDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIF--CEPRVHCSTCHTKF----- 286 fission yeast
19074510 145 SED--GCLRFLLSLLGTRGEPKPLG---------FPATCYCHNRQVLLGLVCPICLSVF--CRFVPVCKKCKSKFS---- 207 Encephalitozoon cun...
19112324 214 VDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIF--CEPRVHCSTCHTKF----- 286 fission yeast
6325313  318 AklkRKPVVPRLKA 331 baker's yeast
19074510 208 F--------TKYES 213 Encephalitozoon cuniculi
19112324 287 T---VEPMSKKLHT 297 fission yeast
19074510 208 F--------TKYES 213 Encephalitozoon cuniculi
19112324 287 T---VEPMSKKLHT 297 fission yeast
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