Conserved Protein Domain Family
GanB

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COG3867: GanB (this model, PSSM-Id:226385 is obsolete and has been replaced by 443076)
Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Statistics
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PSSM-Id: 226385
Aligned: 5 rows
Threshold Bit Score: 524.056
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15614586 166 STIEVGAIITGTSSAWGYLDQFsltlveeqggndvipdpVEADIFVERVDGIPDDFMKGVDISSIIALEQSGVTFYDDHG 245  Bacillus halodurans
16080465   2 KMFFAAAIVWSACSSTGYAaaieke--------khvselRAEDLFVKKVEGMNKDFIKGADVSSVIALENSGVTFYNTNG 73   Bacillus subtilis
15895830   1 MLKKLIKRISLMLLGTGLIINS------------------A----FFSISTSANTFANGADIGWLNQLENNGVKWQDTNG 58   Clostridium acetob...
15643957   1 -MRGVLFVLMISSMAFGLIVN--------------------------PVENLREDFIFGMDVSMLYEIEQLGGKYF-ENG 52   Thermotoga maritima
16121161   1 -MKFFKPALLTVCLSLSLMVGAn----------------AAEPFTIAPLKNVPADFIKGADISTLAEVERQGGKFFNEQN 63   Yersinia pestis
15614586 246 NVQDIFQTLQEAGVNYIRIRIWNDP------YDTNENGYGGGNNDLEKAIEIGKRATKNGMRVLANFHYSDFWADPAKQK 319  Bacillus halodurans
16080465  74 KRQDIFTTLKQAGVNYVRVRIWNHP------YDSNGNGYGGGNNDVQKAIEIGKRATANGMKVLADFHYSDFWADPAKQK 147  Bacillus subtilis
15895830  59 QRKDALQILKNHGINSVRLRVFVNPpsnfvwTKNDGSKCLLGYGDTKGVVYMAQRAKNLGMKVMIDFHYSDHFADPAYQD 138  Clostridium acetob...
15643957  53 VEKDCLEILKNHGINWIRLRVWNDP------RDENGNPLGGGNCDYLKMTEIAKRAKNLGMKVLLDFHYSDWWADPGKQN 126  Thermotoga maritima
16121161  64 VQQDAMAILKANGVNYVRLRLWVDP------KDSDGQSYGGGSNDLATTLALAKRAKAQGLKVLLDFHYSDFWTDPGKQF 137  Yersinia pestis
15614586 320 PPKAWETLSFEDKKQALYEFTKESVKTMLDEGIDIGMVQVGNETTNAFV-------GET--NWEKMSELFNEGSRAVRE- 389  Bacillus halodurans
16080465 148 VPKAWANLSFEAKKAKLYEYTKQSLQKMIKEGVDIGMVQVGNETTGGFA-------GET--DWTKMCQLFNEGSRAVRE- 217  Bacillus subtilis
15895830 139 KPAAWINDNFNQLQKDVYSHTSYVMTALKNAGITPDWVQVGNETNSGMLwp----dGNYr-NFNKWAALINQGYSAIKY- 212  Clostridium acetob...
15643957 127 KPKEWEYLHGELLERAVYSYTKLVLNHMRRNGALPDMVQVGNEVNNGFLwpdgkisGEGagGFDGFTRLLKAAIKAVRE- 205  Thermotoga maritima
16121161 138 KPKAWQKMNYDQLKVAIHDYTRDTIATFKKEGVLPDMVQIGNESNGGLLwpegkswGEGggEFDRLAGLLNAAIGGLREn 217  Yersinia pestis
15614586 390 -VDE-TILVALHFTNPETPGRYETIAQRLYEYNVDYDVFASSYYPFWHG-----TLNNLTTVLSHVADTYDKLVMVAETS 462  Bacillus halodurans
16080465 218 -TNS-NILVALHFTNPETAGRYSFIAETLSKNKVDYDVFASSYYPFWHG-----TLQNLTSVLKAVANTYGKKVMVAETS 290  Bacillus subtilis
15895830 213 -VSP-TSKVIIHLSSGANNSLYRSVFDGLTKAGAKFDVIGMSYYPYWDKvnytqNINNLSYNLNDMASRYHKQVMICEIG 290  Clostridium acetob...
15643957 206 -VDP-DIKIVIHLAEGGNNSLFRWFFDEITRRNVDFDVIGVSYYPYWHG-----TLEDLKNNLYDIATRYNKDVLVVETA 278  Thermotoga maritima
16121161 218 lSSPsDVKIMLHLAEGTKNDTFHWWFDEITKRNVPFDIIGLSMYTYWDG-----PISALQTNMDDISQRYQKDVIVVEAA 292  Yersinia pestis
15614586 463 YTYTREDGDGHANTAPSSG--QTLNYPITVQGQGTAVRDVIEAVVNVGKS-GMGVFYWEPAWIPVgppesieqnkqlweR 539  Bacillus halodurans
16080465 291 YTYTAEDGDGHGNTAPKSG--QTLPYPISVQGQATAVRDVMEAVANTGKA-GLGVFYWEPAWIPVgpktqieknkvlweT 367  Bacillus subtilis
15895830 291 G---LEN--------DSTN--TY--NMIK-Q--------VISKVKAVPGSnGLGVFYWEPEANSS--------------V 332  Clostridium acetob...
15643957 279 YAWTLEDGDGYPNIFNGEEmeLTGGYKATVQGQATFLRDLIEVVNSVPNGhGLGIFYWEGDWIPV--------------- 343  Thermotoga maritima
16121161 293 YGYTLENCDNAENSFTAKEe-KDGGYPGTVQGQANFIHDLMQSVINVPDGrGKGIFYWEPTWISV--------------- 356  Yersinia pestis
15614586 540 DGSGWATSYAAAYDPEdagEWYGGSAVDNQALFDFQGHPLPSLHVFNYVETGTISPVK 597  Bacillus halodurans
16080465 368 YGSGWASSYAAEYDPEdagKWYGGSAVDNQALFDFNGHPLPSLQVFQYAESGHIPKKR 425  Bacillus subtilis
15895830 333 LPDAYPL--------------GSTSKVSNNVLRFTN-----AINAFN----------- 360  Clostridium acetobutylicum
15643957 344 RGAGWKT--------------GEGNPWDNQAMFDFSGNALPSLNVFKLVKTSSPVEIA 387  Thermotoga maritima
16121161 357 PGNTWATPAGMKYIND---NWKEGNARENQALFDCQGKVLPSMKVFN----------- 400  Yersinia pestis
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