Conserved Protein Domain Family
AbfA

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COG3534: AbfA (this model, PSSM-Id:226064 is obsolete and has been replaced by 442755)
Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Statistics
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PSSM-Id: 226064
Aligned: 10 rows
Threshold Bit Score: 548.907
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15896677 166 EDENGNAISEDKTIGKINgqwRKYEGHLRATKStsnaklavsitgeakMNLDMVSLFPqDTWKNRKYGLRKDLVERLKDL 245 Clostridium acetobu...
15891822   1 -MKARVSVHRDFRIGRID---DRLYSAFIEHMG---------------RAIYGGIYEP-GHPQADANGFRKDVLKFVQDL 60  Agrobacterium tumef...
22001512   2 TLTATMVVDKSFKIGEID---KRIYGSFIEHLG---------------RAVYEGIYEP-GHPDGDEQGFRKDVIRLVQEL 62  Bacillus halodurans
15614437   1 -MKQSIKVYTDLEHGKIS---KHIYGHFSEHLG---------------RCIYEGLWVGeDSPIPNTEGIRNDVLGALQEL 61  Bacillus halodurans
2829808    1 MKKARMIVDKEYKIGEVD---KRIYGSFIEHMG---------------RAVYEGIYEP-DHPEADEDGFRKDVQSLIKEL 61  Bacillus subtilis
2494816    1 MSEHQAVIQTDIAKGTIN---KNIYGHFAEHLG---------------RGIYEGIWVGtDSDIPNINGIRKDVLEALKQL 62  Bacillus subtilis
16125671  23 EISATATLRADQSGPAIS---RYIYGQFSEHLG---------------AGVYDGIWVGpDSKIPNVRGVRSDVVGALKAI 84  Caulobacter crescen...
16264794   1 -MRAKATLNREYTISSVD---KRVYGSFLEHMG---------------RAVYTGIYEP-GHENADKDGFRTDVLDMVRDL 60  Sinorhizobium meliloti
15643050   1 -MSYRIVVDPKEVVKPIS---RHIYGHFTEHLG---------------RCIYGGIYEE-GSPLSDERGFRKDVLEAVKRI 60  Thermotoga maritima
13473100   1 -MKARVTANAAYAIADID---KRLYGSFLEHLG---------------RAVYTGIYEP-GHPQADAEGMRKDVIELVRAL 60  Mesorhizobium loti
15896677 246 KPRFLRFPGGCIVEGnskeeiYNWKDTIGNVEERKENTN-LWG-YNQSYGLGFYEYFQLCEDIGATPVPVLNCGMtcqaR 323 Clostridium acetobu...
15891822  61 KIPAIRYPGGNFVSA------YRWEDGIGPRDQRPIRLDlAWR-SKETNQIGINEFADWAQMAGIEMMLAVNLGS----R 129 Agrobacterium tumef...
22001512  63 QVPLVRYPGGNFVSG------YNWEDGVGPVSERPKRLDlAWR-TTETNEIGTNEFVDWAKKVGAEVNMAVNLGS----R 131 Bacillus halodurans
15614437  62 NIPVLRWPGGCFADE------YHWKDGVGPRENRKRMVNtHWGgVVENNHFGTHEFMRLCELLGAEPYICGNVGS----G 131 Bacillus halodurans
2829808   62 QVPIIRYPGGNFLSG------YNWEDGVGPVENRPRRLDlAWQ-TTETNEVGTNEFLSWPKKVNTEVNMAVNLGT----R 130 Bacillus subtilis
2494816   63 HIPVLRWPGGCFADE------YHWANGVG---DRKTMLNtHWGgTIESNEFGTHEFMMLCELLECEPYICGNVGS----G 129 Bacillus subtilis
16125671  85 KTPVIRWPGGCFADE------YHWRDGIGPRDKRPSRKNnWWGgSPETNAFGTHEFMDFAEQVGADPYVAVNVGS----S 154 Caulobacter crescen...
16264794  61 DMPIVRYPGGNFVSA------YRWEDGIGPREERPVRLDlAWR-TRETNQVGVNEFADWAKLAGTEMMLAMNLGS----R 129 Sinorhizobium meliloti
15643050  61 KVPNLRWPGGNFVSN------YHWEDGIGPKDQRPVRFDlAWQ-QEETNRFGTDEFIEYCREIGAEPYISINMGT----G 129 Thermotoga maritima
13473100  61 DTPICRYPGGNFVSA------YNWEDGIGPKENRPRRLDlAWR-TTEPNLVGIHEFADWAEKAGTEMMLAVNLGS----R 129 Mesorhizobium loti
15896677 324 GVngvpnymapvgpdldpyiQNAVDLVEYANGDASTYWGRKRIESGHKKPFNLKYMAIGNEQWGPeyhkrfeafqkvlnq 403 Clostridium acetobu...
15891822 130 GL------------------DDARNFLEYVNFPGGTALSDLRRSHGTEKPHGVKMWCLGNEMDGP--------------- 176 Agrobacterium tumef...
22001512 132 GV------------------DAARNLVEYCNHPSGSYWSDLRISHGYKDPHNIKTWCLGNEMDGP--------------- 178 Bacillus halodurans
15614437 132 TV------------------QEMQEWVEYMTFDGESPMANWRTENGREEPWALKYFGVGNEN------------------ 175 Bacillus halodurans
2829808  131 GI------------------DAARNLVEYCNHPKGSYWSDLRRSHGYEQPYGIKTWCLGNEMDGP--------------- 177 Bacillus subtilis
2494816  130 TV------------------QEMSEWIEYMTFEEGTPMSDWRKQNGREEPWKLKYFGVGNEN------------------ 173 Bacillus subtilis
16125671 155 NP------------------TVMREWIEYMTSPGEDTLAQERRANGRDKPWKVPFIGIGNES------------------ 198 Caulobacter crescen...
16264794 130 GL------------------DDARNFLEYCNHPGGTYWSDLRSKHGYKEPHNVRIWCLGNEMDGP--------------- 176 Sinorhizobium meliloti
15643050 130 TL------------------DEALHWLEYCNGKGNTYYAQLRRKYGHPEPYNVKFWGIGNEMYGE--------------- 176 Thermotoga maritima
13473100 130 GL------------------DEARAFVEYVNHPGGSYWSDLRATNGRAQPWNCRLWCLGNEMDGP--------------- 176 Mesorhizobium loti
15896677 404 kcpgitlisnagtspsgstfddnWNWIKEKAPNTVVdehyymspdwFLSNTNRYDKYDRNSNKVFVGEYASQSNTLKSAL 483 Clostridium acetobu...
15891822 177 -----------------------WQIGHKTAVEYGR----------LANETAKAFKGFDPTIEAIVCGSSNDGMPTYPEW 223 Agrobacterium tumef...
22001512 179 -----------------------WQIGQKTAEEYGR----------VAAEAGKVMKLVDPSIELVACGSSNSKMATFADW 225 Bacillus halodurans
15614437 176 -----------------------WGCGGHMRPEY------------YADLYRRYQTYVRNYGDNKIYKIAGGANVDDYRW 220 Bacillus halodurans
2829808  178 -----------------------WQIGHKTADEYGR----------LAAETAKVMKWVDPSIELVACGSSNSGMPTFIDW 224 Bacillus subtilis
2494816  174 -----------------------WGCGGNMHPEY------------YADLYRRFQTYVRNYSGNDIYKIAGGANVDDFNW 218 Bacillus subtilis
16125671 199 -----------------------WGCGGEMTPEY------------YANEYRRFSSFFHKNSDNPAVRVASGANSFDVNW 243 Caulobacter crescen...
16264794 177 -----------------------WQVGHKSAAEYGH----------LANEVSKAFKYFDKTLETVVCGSSNDKMKTYPEW 223 Sinorhizobium meliloti
15643050 177 -----------------------WQVGHMTADEYAR----------AAKEYTKWMKVFDPTIKAIAVG------CDDPIW 217 Thermotoga maritima
13473100 177 -----------------------WQVGHKSASEYGH----------LANETAKALRGLDPTVELVVCGSSHSNMPTYPQW 223 Mesorhizobium loti
15896677 484 AEGAYLTGLERnSDIVKMASYaplfakaddyqwspdmiwfNGNTNYVTPNYnvqklFSTNLGTQIVKGDLIKPTAHVKND 563 Clostridium acetobu...
15891822 224 EREVLEECYEN-VDHISLHKY-------------------FGNNSRDTLNY-----FGKIEETGRYIQTIAGVIDYVKAK 278 Agrobacterium tumef...
22001512 226 EATVLDHTYDY-VDYISLHTY-------------------YGNRDDDLANY-----LAQSMDMDEFIRSVIAIADYVKAK 280 Bacillus halodurans
15614437 221 TEVLMREAAHL-MDGLSLHYYtvpgd----------fwenKGSALDDRESE-----WFKTLKKSFRMDELLTKHSTIMDR 284 Bacillus halodurans
2829808  225 EAKVLEHTYEH-VDYISLHTY-------------------YGNRDNNLPNY-----LARSMDLDHFIKSVAATCDYVKAK 279 Bacillus subtilis
2494816  219 TDVLMKKAAGL-MDGLSLHYYtipgd----------fwkgKGSATEFTEDE-----WFITMKKAKYIDELIQKHGTIMDR 282 Bacillus subtilis
16125671 244 TDVVTKAAAKR-MDAISLHYYtiqtg----------dwnkKGAATGFDKAA-----WGKSFAQTLRMDDLLRQHIAVLDR 307 Caulobacter crescen...
16264794 224 EATVLEASYDS-VDYISLHKY-------------------FGNEEQDTLNY-----YAKAIELDRYIVTIGGVIDYIKAK 278 Sinorhizobium meliloti
15643050 218 NLRVLQEAGDV-IDFISYHFY---------------------TGSDDYYET-----VSTVYLLKERLIGVKKLIDMVDTA 270 Thermotoga maritima
13473100 224 EATVLEATYEQ-VDYISLHMY-------------------FENYEKNTSEY-----LALPAKLDRYIGTVAGIIDYVKAK 278 Mesorhizobium loti
15896677 564 IKGgvllgawstqvqydnvkvtdnttgKEIFSDSFDnninQWTsasgNWVVKDgKLELDQIAdncRILTKDNTWSNYTLs 643 Clostridium acetobu...
15891822 279 KRA------------------------KNDVSICFD----EWN----VWYHIR-EDDGKRIKswdWPEAPALLEETYNF- 324 Agrobacterium tumef...
22001512 281 KRS------------------------KKTIHLSFD----EWN----VWFHSN-EADRQITP---WSVAPPLLEDIYTF- 323 Bacillus halodurans
15614437 285 YDP------------------------EKRVGLIVD----EWG----TWFDV---E-----P----GTNPGFLYQQNTI- 319 Bacillus halodurans
2829808  280 TRS------------------------KKTINLSLD----EWN----VWYHSN-EADKKVEP---WITARPILEDIYNF- 322 Bacillus subtilis
2494816  283 YDP------------------------EQRVGLIID----EWG----TWFDP---E-----P----GTNPGFLYQQNTI- 317 Bacillus subtilis
16125671 308 NDP------------------------QKRIGLYVD----EWG----TWYDT---E-----P----GTNPGHLYQLNTL- 342 Caulobacter crescen...
16264794 279 KRS------------------------KRDVKICFD----EWN----VWYHDR-KEDGERIAswdWPEAPPLLEELYNL- 324 Sinorhizobium meliloti
15643050 271 R--------------------------KRGVKIALD----EWN----VWYRV---------S-------DNKLEEPYDL- 299 Thermotoga maritima
13473100 279 TRS------------------------KRDVKISFD----EWN----VWYHQR-KQDAERMRgwdWPEAPRLLEDIYNF- 324 Mesorhizobium loti
15896677 644 vdakKLSGKEGFLVGFGAKDSSNFYWYNIGGWGNTKTAVEKETDGSKSTVSEADAKYSTVTTGQDYKIKIVVDGNKVSCY 723 Clostridium acetobu...
15891822 325 ----EDALFVAGLLNEFIRRSDRVRIACIAQLVNVIAPIRAEKNGPAWRQTIYYPYQFASLYGRGVALNVAVDCPTYDCN 400 Agrobacterium tumef...
22001512 324 ----EDALLVGSMLITLLKHADRVKIACLAQLVNVIAPIMTEKGGPAWKQTIFYPYMHASVYGRGVALQAQISSPKYDSK 399 Bacillus halodurans
15614437 320 ----RDALVAGVHFHIFHEHNDRVHMANIAQMVNVLQAMVLTEGEQMLLTPTYHVFNMYKVHQDATRLEVNADVGTYKFG 395 Bacillus halodurans
2829808  323 ----EDALLVGSLLITMLQHADRVKIACLAQLVNVIAPIMTEKGGEAWRQPIFYPYMHASVYGRGESLKPLISSPKYDCS 398 Bacillus subtilis
2494816  318 ----RDALVAASHFHIFHQHCRRVQMANIAQTVNVLQAMILTEGERMLLTPTYHVFNMFKVHQDASLLATETMSADYEWN 393 Bacillus subtilis
16125671 343 ----RDGVLAAVNFNIFHKHAERVRMANIAQTINVLQAVILTKGDQMVLTPTYYAHQMYMPFQDSTAIPLEITAPEIDVA 418 Caulobacter crescen...
16264794 325 ----EDAIFVGSLLNVFIRRSDRVKIACMAQLVNVIAPILTKAGGPAWRQSIYYPLQYASKYGRGTALTVAQSGPTYDCE 400 Sinorhizobium meliloti
15643050 300 ----KDGIFACGVLVLLQKMSDIVPLANLAQLVNALGAIHTEKDG-LILTPVYKAFELIVNHSGEKLVKTHVESETYNIE 374 Thermotoga maritima
13473100 325 ----EDVLQVGCIINTFIRRSDVVRIACIAQLVNVIAPIMTDPGGGAWRQTIYWPFMLASRHGRGTALQLAVEVPTYDAA 400 Mesorhizobium loti
15896677 724 LngqltnqftaPERDTDVYTSTSYDSKTNELIAKVVNVADED-RKVRINVNGSKNi--SSTANVQYITGSSEDDTNSFDK 800 Clostridium acetobu...
15891822 401 A----------ADDVKYLDVAGVYDEAEGMVTLFVLNRHLTEaADINVGLTGFSS---ATLDLHLAMAGYDLRVGNGPDQ 467 Agrobacterium tumef...
22001512 400 D----------FTDVPYLDAAVVHLEEAEEVTIFAVNKHQTEsLNLQCDMRSFEG---YHVLEHIVLEHENMKATNQG-- 464 Bacillus halodurans
15614437 396 -----------DDELPAVTVSASKDNE-GAIHVSVCHLDPHRdTDLTLKLNGLNKslsASSVSGELLTANELNAHNTFER 463 Bacillus halodurans
2829808  399 D----------FTDVPYVDAAVVYSEEEETLTIFAVNKAEDQ-METEISLRGFES---YQIAEHIVLEHQDIKATNQHN- 463 Bacillus subtilis
2494816  394 -----------GETFPQISISASKQAE-GDINITICNIDHQNkAEAEIELRGLHK---AADHSGVILTAEKMNAHNTFDD 458 Bacillus subtilis
16125671 419 -----------GSKIPAFNASAAKGKD-GKIYVAVANMALDDsVKLNVSLAGLKA----KMVSGQVLTADKMDAMNDFGA 482 Caulobacter crescen...
16264794 401 V----------AQDVPYLDLSAVLHEDGKSIAVFAINRSLDEpLGLTVDLQGFKG---AKIVEHQMLAGDDLKARNSVED 467 Sinorhizobium meliloti
15643050 375 GvmfinkmpfsVENAPFLDAAASISEDGKKLFIAVVNYRKEDaLKVPIRVEGLGQ----KKATVYTLTGPDVNARNTME- 449 Thermotoga maritima
13473100 401 A----------ADKVPWLDIAGVHDSNAGTLTFFAINRHGAEtIEADVALERFA----AKSIEHTIIRHDDLGACNTKDA 466 Mesorhizobium loti
15896677 801 PENVSIKTKKLNNISK--NFDYDADKYSVSVIRIKLK 835 Clostridium acetobutylicum
15891822 468 PDRVVPVPGSGVGVEDg-ALKGSVSALSYHVLRLKVQ 503 Agrobacterium tumefaciens str. C58 (Cereon)
22001512 465 REQVTPHHNGDSAIDQg-RLTANLAKLSWNVIRLGKK 500 Bacillus halodurans
15614437 464 PNEVEPVPYEPASVSGh-EMELKVPASSVLRVTIRP- 498 Bacillus halodurans
2829808  464 RKNVVPHSNGSSSVSEn-GLTAHFTPLSWNVIRLKKQ 499 Bacillus subtilis
2494816  459 PHHVKPESFRQYTLSKn-KLKVKLPPMSVVLLTLRAD 494 Bacillus subtilis
16125671 483 KPAVVPVPFKGGKLSGd-RLTLDIPSKSVVVVRLD-- 516 Caulobacter crescentus CB15
16264794 468 QNRIVPKSGKELTMDDtgTLVGSLPPRSYHFVLLSVA 504 Sinorhizobium meliloti
15643050 450 NPNVVDITSETITVDT--EFEHTFKPFSCSVIEVELE 484 Thermotoga maritima
13473100 467 PDTVSPVKGNGAALSSk-GMTLNLPPHSYSMVRVTL- 501 Mesorhizobium loti
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