1I81,1LJO,1I8F,1I5L


Conserved Protein Domain Family
LSM1

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COG1958: LSM1 
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Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
linked to 3D-structure
Statistics
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PSSM-Id: 224869
Aligned: 66 rows
Threshold Bit Score: 41.1331
Threshold Setting Gi: 19074021
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1I81_A     9 QRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE-----------------------DGEV- 64  Methanothermobacter...
19075064   1 -----MKLVRVLRKCKNERVKIETKEGRRIEGKIVSVDKTMNVEMVDVVVDG-----------------------APAS- 51  Encephalitozoon cun...
19074364   1 ------MDGSVYAAFIGRTVKVKICDSSEFRGTSVAIDAYLNISLESASYLQ-----------------------DGQE- 50  Encephalitozoon cun...
19173340   1 ---MELPALEVLKRSRNKCVRIVTLNNKTYRGVLENFDMHVNTHLKDSYLQMd---------------------eKGEE- 55  Encephalitozoon cun...
19173302   1 -----MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILS-----------------------SHPG- 51  Encephalitozoon cun...
12230564   1 MK-----LVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVk---------------------gREPVp 54  fission yeast
19075959   1 ---MLF--YSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDa---------------------sKYPH- 53  fission yeast
586410     1 ---MLF--FSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDe---------------------kKYPH- 53  baker's yeast
417779     1 MK-----LVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLpqprlnklnsngiamaslyltggQQPTa 75  baker's yeast
1173457    3 MNG---IPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEp----------------------QGAVt 57  baker's yeast
19075064   1 -----MKLVRVLRKCKNERVKIETKEGRRIEGKIVSVDKTMNVEMVDVVVDG-----------------------APAS- 51  Encephalitozoon cun...
19074364   1 ------MDGSVYAAFIGRTVKVKICDSSEFRGTSVAIDAYLNISLESASYLQ-----------------------DGQE- 50  Encephalitozoon cun...
19173340   1 ---MELPALEVLKRSRNKCVRIVTLNNKTYRGVLENFDMHVNTHLKDSYLQMd---------------------eKGEE- 55  Encephalitozoon cun...
19173302   1 -----MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILS-----------------------SHPG- 51  Encephalitozoon cun...
12230564   1 MK-----LVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVk---------------------gREPVp 54  fission yeast
19075959   1 ---MLF--YSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDa---------------------sKYPH- 53  fission yeast
586410     1 ---MLF--FSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDe---------------------kKYPH- 53  baker's yeast
417779     1 MK-----LVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLpqprlnklnsngiamaslyltggQQPTa 75  baker's yeast
1173457    3 MNG---IPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEp----------------------QGAVt 57  baker's yeast
1I81_A    65 --TRRLG-TVLIRGDNIVYISP 83  Methanothermobacter thermautotrophicus
19075064  52 --------TYTVRGSSIRYVLF 65  Encephalitozoon cuniculi
19074364  51 ---PRYYsSLFIKGSYIDHIAL 69  Encephalitozoon cuniculi
19173340  56 ----IYIgEVLINGGTIACFDI 73  Encephalitozoon cuniculi
19173302  52 ---LSSIsVCSIRGSSIKYILV 70  Encephalitozoon cuniculi
12230564  55 ------VeTLSIRGNNIRYYIL 70  fission yeast
19075959  54 ---MAAVkDLFIRGSVVRYVHM 72  fission yeast
586410    54 ---LGSVrNIFIRGSTVRYVYL 72  baker's yeast
417779    76 sdNIASLqYINIRGNTIRQIIL 97  baker's yeast
1173457   58 -----HMdQIFVRGSQIKFIVV 74  baker's yeast
19075064  52 --------TYTVRGSSIRYVLF 65  Encephalitozoon cuniculi
19074364  51 ---PRYYsSLFIKGSYIDHIAL 69  Encephalitozoon cuniculi
19173340  56 ----IYIgEVLINGGTIACFDI 73  Encephalitozoon cuniculi
19173302  52 ---LSSIsVCSIRGSSIKYILV 70  Encephalitozoon cuniculi
12230564  55 ------VeTLSIRGNNIRYYIL 70  fission yeast
19075959  54 ---MAAVkDLFIRGSVVRYVHM 72  fission yeast
586410    54 ---LGSVrNIFIRGSTVRYVYL 72  baker's yeast
417779    76 sdNIASLqYINIRGNTIRQIIL 97  baker's yeast
1173457   58 -----HMdQIFVRGSQIKFIVV 74  baker's yeast
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