Conserved Protein Domain Family
GanA

?
COG1874: GanA (this model, PSSM-Id:224786 is obsolete and has been replaced by 441478)
Beta-galactosidase GanA [Carbohydrate transport and metabolism]
Statistics
?
PSSM-Id: 224786
Aligned: 15 rows
Threshold Bit Score: 370.211
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
15895779  59 VSYDHYSLMIDGKRIFLYSGEFDYWRLPSqSGWMDVLEKMKAAGFNAVTI-YFNWGFHSPKQGKYDFSg----IRDVDkL 133  Clostridium acetob...
16077775   1 ------------MRKLYHGACYYPELWDE-ETIQQDIDIMREVGVNVVRIgEFAWSVMEPEEGKIDVG-----FFKEI-- 60   Bacillus subtilis
16125041   1 --------------------------MEE-AMGMSRFATAVGLALALVCG-PLASGAHAADAAMPQLV-----TKDGR-H 46   Caulobacter cresce...
14521734   6 VSYSSKFYTIDGEELPIYGGTLQFFRVPR-NAWKDRLEKMKRHGLNAVDT-YVAWNWHEPQEGSFDFTgethpQRDLVgF 83   Pyrococcus abyssi
14590414   6 VQHDGRLYSLDDERIVVYGGTLQYFRVPR-NYWEDRLRKMKSHGLNTVET-YIAWNWHEPQEGVFDFTgethpQRDLIgF 83   Pyrococcus horikoshii
16264839   1 -------------------MCYYPEQWPR-GKWAEDARRMVELGLSWVRIgEFAWAKIEPRSGEFHWE-----WLDEA-- 53   Sinorhizobium meli...
15900005   3 RFEIRDDFYLDGKSFKILSGAIHYFRVPP-EDWYHSLYNLKALGFNTVET-YVAWNLHEPCEGEFHFEg----DLDLEkF 76   Streptococcus pneu...
15643079   1 -------MVNPKLPVIWYGGDYYPEQWDE-ETFERDIRMFKEAGINVVTIgVFSWSLIQPDENTYDFS-----FFEKV-- 65   Thermotoga maritima
15643951   1 ----------------MLGVCYYPEHWGT-EKVEEDFRRMKELGIEYVRIgEFAWSRIESERGKFNWD-----WLDKT-- 56   Thermotoga maritima
15837442  28 FSTRGTQFIRDGRPYQLISGAIHFQRIPR-AYWKDRLQKARAMGLNTVET-YVFWNLVELREGQFDFTg----NNDISaF 101  Xylella fastidiosa...
15895779 134 LTMAQKIGLYVVARPGPyinaetdGGGYPGWLTTQQgrartasQDYTAAYEQWLSAIDPIIEKHQITNGgsviLYQVENE 213  Clostridium acetob...
16077775  61 IARLYDSGIETIMCT-P-------TPTPPIWFSHGR-------PERMHANEKREIMGHGSRQHACTNNP----YFRKKAA 121  Bacillus subtilis
16125041  47 ALMVDGAPFLMLAAQVNn------SSAWPSQMAKVW-------PAIEKVGAN-TVQVPIAWEQIEPVEGq---FDFSYLD 109  Caulobacter cresce...
14521734  84 LELAEDMGFYVLIRPGPyicgewrNGGIPQWLIDKH-------PEILAKGPNGSLPNDIYYPPITYLHP----IYLEYVM 152  Pyrococcus abyssi
14590414  84 LELAQKLGLYVIIRPGPyicgewkNGGIPDWLINSH-------PEILAKSPNGSFPRDVYYPPITYLHP----TYLEYAM 152  Pyrococcus horikoshii
16264839  54 IDVLGKAGLKVILGT-P-------TAAPPKWLVNRY-------PEILPVDATGAVRKFGARRHYCFSSR----RYRSEAA 114  Sinorhizobium meli...
15900005  77 LQIAQDLGLYAIVRPSP--------FICAEWEFGGL-------PAWLLTKNMRIRSSDPAY--IEAVGR----YYDQLLP 135  Streptococcus pneu...
15643079  66 MDRLYKEGIYVCLAT-P-------TSAPPHWMTQKY-------PEILFTDVNGVKREKGGRQNFCPNSE----KYRYFAR 126  Thermotoga maritima
15643951  57 LELAEKMGLKIVLGT-P-------TATPPKWLIDEH-------PEILPVDKDGRVKNFGSRRHYCFSSP----VYREEVK 117  Thermotoga maritima
15837442 102 VREAASQGLNVILRPGP--------YVCAEWEAGGF-------PAWLFADPTLRVRSQDPR-FLDASQR-----YLEALG 160  Xylella fastidiosa...
15895779 214 YtggdalYMQNIRDKA-RKDGINVPTFHNDKsgpkgrwssgtgapdmyaydSYPGLaaipsyygdPRKFAPNSPVFLael 292  Clostridium acetob...
16077775 122 I------ITTAIAKE--LGRLPGLIGWQLDN--------------------EFKCHv-------aECMCETCLRLWH--- 163  Bacillus subtilis
16125041 110 L------LLEQARERKvRLVLLWFGTWKNSSp-------------------SYAP-----------EWVKLDDKRFP--- 150  Caulobacter cresce...
14521734 153 Kwy--eaVFPIIREHL-YTNGGSIITVTIDDe------------------pSYWETif------qPFLTDYNEPITRegg 205  Pyrococcus abyssi
14590414 153 Kwy--eeVLPIIRDYL-YSNGGSIISVTIDDe------------------pSYWETif------qPFLTDYNEIIVReng 205  Pyrococcus horikoshii
16264839 115 R------ITEAMARR--YGEHIYVHAWQTDN--------------------EYGDHdt------iYSYSAEAVGAFR--- 157  Sinorhizobium meli...
15900005 136 R----------LVPRL-LDNGGNILMMQVEN--------------------EYGSY---------GEDKAYLRAIRQ--- 172  Streptococcus pneu...
15643079 127 N------IAEKLAEH--FKDHPALVLWHVNN--------------------EYLN----------YCYCDICRGKFQ--- 165  Thermotoga maritima
15643951 118 R------IVTIIVKR--YGKHPAVAGWQTDN--------------------EYGCHdt------vRCYCPRCKKAFQ--- 160  Thermotoga maritima
15837442 161 T---------QVRPLL-NGNGGPIIAVQVEN--------------------EYGSY---------GDDHGYLQAVRA--- 198  Xylella fastidiosa...
15895779 293 gggwfdPWGGKSYAiLSKNYNANYENVLYNHVVSEGATMMSIYmt---yGGTNwgyLPFPGVYssYDYTAAISESrqlGS 369  Clostridium acetob...
16077775 164 ------DWLKNRYG-VIERLNEAWGTDVWSETYQTFEQVPQPG-------PAPf--LHHASLR--TMYQLFSMEM---IA 222  Bacillus subtilis
16125041 151 -------RLIKDDG-ERSYSMSPLAKSTLDADRKAFVALMTHL-------KAK---DAAQKT---VIMVQVENETg--TY 207  Caulobacter cresce...
14521734 206 ---lwhKWLEMNY--SIDELGERYGVDI-S----DYGDIKPPS------DFSE----PLTKI---LDWHHFKIWM---IN 259  Pyrococcus abyssi
14590414 206 ---iwhSWLKENY--SLGDLEERYGERF-S----DYTEIAPPK------SFSE----PLPKV---LDWHHFKIWM---IN 259  Pyrococcus horikoshii
16264839 158 ------LWLAERYg-SIDELNRAWGTSFWSMRYDSFEEIDLPN------NLVE---EPSPTHG--VDFIRFSSDQ---VK 216  Sinorhizobium meli...
15900005 173 ------LMEECGVTcPLFTSDGPWRATLKAGTLIEEDLFVTGN-------FGS----KAPYNF--SQMQEFFDEH---GK 230  Streptococcus pneu...
15643079 166 ------NWLKEKYG-TLDELNRRWNTRFWSQTFTAWEEIPVPTtrsvlvWRKDryqSVLPELY--LDYRRFMTQS---ML 233  Thermotoga maritima
15643951 161 ------KWLERKYEgDIKKLNEAWGTVFWSQEYRSFDEIELPN------LTPA---DPNPSHL--LDYYRLASDQ---VV 220  Thermotoga maritima
15837442 199 ------LFIKAGLG-GALLFTADGAQMLGNGTLPDVLAAVNVA-------PGE----AKQALD---KLATFHPGQ----- 252  Xylella fastidiosa...
15895779 370 KYNEEKLLATMYRTltPltktdplttiEAPSNPNLLANaiensDTKTQFYILRHSNGSSISnDNTTLKIQSADGIyilpq 449  Clostridium acetob...
16077775 223 SFADEQAKIIRCYS-------------DAPITHNGSVM------FSVDNERMFQNLDFASY-DTYASQENASAFL----- 277  Bacillus subtilis
16125041 208 GSVRDFGPAAQKVF-------------NGPAPATLVKA------VGAKPGTWSQAFGKDAD-EFFHAWHIGRFVD----- 262  Caulobacter cresce...
14521734 260 EYVRRLYEKMKDYVdvP----------ITLLDPYLLLAa----WRYFYEYVKENNLNIHLWtEFWYSFYRSFDFKe---- 321  Pyrococcus abyssi
14590414 260 EYVRRLYEKIREYVdvP----------ISLLDPYLLLAa----WKEFYLYVTRHKLDIHLWtEFWYSFYRTFDFKe---- 321  Pyrococcus horikoshii
16264839 217 SFNKAQVDIIRAHS--P----------GRPVTHNFMSQ-----NTDFDHYRVGEDIDIASW-DVYPMGG-LLNGRlaakd 277  Sinorhizobium meli...
15900005 231 KWPLMCMEFWDGWF-------------NRWKEPIITRD------PKELADAVREVLEQGSI--NLYMFHGGTNFG----- 284  Streptococcus pneu...
15643079 234 ECFLEEYRAIKKHT--P----------DIPVTTNLIAAt----FKEWNYFEWAKHMDVAAW-DNYPGYKEDFSVI----- 291  Thermotoga maritima
15643951 221 EFNKLQVEIIREYS--P----------GRFITHNFMSG-----FTDFDHYKLSKDLDFATW-DNYPLGHTLVFLRmkget 282  Thermotoga maritima
15837442 253 --PQLVGEYWAGWF-------------DQWGKPHAQTD------AKQQADEIEWMLRQGHS-INLYMFVGGTSFG----- 305  Xylella fastidiosa...
15895779 450 epgtsiningqesKFIVANFQLGSEHLVYSTSNLYTYVTQGNRdtaifYGGQESDGEtvLRYKNQPKVTVLCGNVKSRYD 529  Clostridium acetob...
16077775 278 --------------LNCDLWRNLKQGRPFWILETSPSYAASLEs----SAYPHADGY--LQAEAVSSYALGSQGFCYWLW 337  Bacillus subtilis
16125041 263 --------------------QVAAG---GKAVYPLPMYVNAAL------RDPIKPGD-----PKTYSAGGPTDNVIGVWQ 308  Caulobacter cresce...
14521734 322 ------------dKLGHLYYKIGLYRYYIGKMGTPPLSIETQSs---lANVIEVDEA--ELLYSLLP-ALGIHNVNYYLY 383  Pyrococcus abyssi
14590414 322 ------------dKLGHLYFKTGIYRYYVSKLKTPPLSIETQAs---lANVIEKDEA--ELLYALLP-ALGIHNLNYYLY 383  Pyrococcus horikoshii
16264839 278 kehylrvgdpdqpAFNHDLYRAVGR-GRVWVMEQQPGPVNWAA-----HNQSPADGM--VRLWTWLAYAHGVDMVSYFRW 349  Sinorhizobium meli...
15900005 285 -------------------FMNGCS---ARGTLDLPQVTSYDY-----DALLDEEGN-----PTAKYLAVKKMMATHFSE 332  Streptococcus pneu...
15643079 292 -------------SLRHSLIRCLKEGKPFVLMEQSPSQACWRW-----YNPQKRPGE--MRLWSYHALAHGAETLMFFQL 351  Thermotoga maritima
15643951 283 knpfdrvghpdiiSFSHDLYRGVGR-GRFWVMEQQAGPVNWAP-----YNLWPAKGA--VRLWTWQAFAHGAEVVSYFRW 354  Thermotoga maritima
15837442 306 -------------------FMNGANFQGGPSDHYSPQTTSYDY-----DAALDEAGR-----PMPKFVLFRDVITRVTGL 356  Xylella fastidiosa...
15895779 530 SVSGDLRlNYKHDGSISRVMIKDdnkelmllfTTDITAqtfwceDTSIGEILVRGPyLVRSASIRDRNKLELqgdtdkas 609  Clostridium acetob...
16077775 338 RQQRSGS-EISHGSVLSA-WGEP---------TIGYQN------VLAVERARKEIEpIILSTEPVQAEAAMT-------- 392  Bacillus subtilis
16125041 309 AAAPSID-LIAPDIYMKESVKYE---------AVLGHY------ARPNNALFVAET--GNDPAYARYVFSTLg------- 363  Caulobacter cresce...
14521734 384 VGGENPRgYESHNGVTWDVYSPI---------GLDGRErqhveaIKWIGKFLRSNK-DFGKSEVKFKVAFGVy------e 447  Pyrococcus abyssi
14590414 384 VGGENPRgYESHNGVTWDVYSPI---------GLDGRErqhvepIKWIGEFLKSNI-DFVDSQFKARVAFGMy------e 447  Pyrococcus horikoshii
16264839 350 RQAPFAQ-EQFHAGLLLP-NSEA---------DQGYLE------VAEVVAEMKRLP--EGEVRGKAQVAIVL-------- 402  Sinorhizobium meli...
15900005 333 YPQLEPLyKESMELDAIP-LVEK---------VSLFET------LDSLSSPVESLYpQKMEELGQSYGYLLY-------- 388  Streptococcus pneu...
15643079 352 RQSKGGV-EKFHGAVITHVDSPN---------TRVFQE------VKRVGEEIKSLS-DILDARVVSQTALLF-------- 406  Thermotoga maritima
15643951 355 RQAPFAQ-EQMHSGLLAP-DSAP---------YPGYHE------VKQVFEELKNID--INEP-VESEVALVF-------- 406  Thermotoga maritima
15837442 357 QPPPLPAaTRFIDLPNTP-LRAS---------ASLWDNl-----PAAVATTADPQP---MERYGQAYGYILY-------- 410  Xylella fastidiosa...
15895779 610 DIEVFaptsvneikWNGEKVKALQTS--YLSYTFSLLSPEQVLIPVITNWKYSYETneaqSEFDDSSWISAnktttnnPV 687  Clostridium acetob...
16077775 393 -YSDRa--------KAFIKTEPHRG----LRHRSLVTHFYERILNTGIHRDLIPEG----APLDGYRLLFT-------PF 448  Bacillus subtilis
16125041 364 KQGIG---------WSPFGMDYTGY----GNYPLGAAKVDEALIEVFAANYRLLAP-----MARELARLSF-------EG 418  Caulobacter cresce...
14521734 448 PYEPLa-------lWGYRPENFKESVn-LNEYLLGERGLLTLLAMSNVPFDVVDLEtsslEELLEYEQLWV-------YS 512  Pyrococcus abyssi
14590414 448 PYEALn-------lWGYKPESFEESVn-LNEYLFGERGLLTLLAMSNVPFDVIDLEistlEEMLQYEQIWV-------YS 512  Pyrococcus horikoshii
16264839 403 DYESR---------WATRVLPQGRS----YSASAVALDWYSTVARLGVDVDFIGQH----SDIAGYKLILA-------PD 458  Sinorhizobium meli...
15900005 389 RTETN---------WDAEEERLRIIDgrDRAQLYVDGQWVKTQYQTEIGEDIFYQG-----KKKGLSRLDI--------- 445  Streptococcus pneu...
15643079 407 DWESW---------WAMEDTLTPSV---DFRYLNEVQKYFKALVKTGLGVDVVGKD----QNFERYRVLVA-------PV 463  Thermotoga maritima
15643951 407 DYETA---------WVFSIQPHGEG----VNYIDLVFRFYSALRRLGLNVDIVPPG----SSLDGYKMIVV-------PS 462  Thermotoga maritima
15837442 411 RTTLHg--------PRKGTLYLGEVRddARVYVDRLFVGRAERRRQQVSVEVDIPS--------GAHRLDV--------- 465  Xylella fastidiosa...
15895779 688 KPLTPTVLYADDYGFHHgvvwfRGHFKASGKETGIILDgeggtngaYAVWINGFYLGASLSgikNFTFPKNVLKTSDDNV 767  Clostridium acetob...
16077775 449 VPYLSSEFIKKASAFAE-----AGGIWITGPLTGGRTC--------EHTIHTDCGLGELEK---TSGIKTLFTFPMNEN- 511  Bacillus subtilis
16125041 419 KVWGGAEPDDRAAQTTT------MGDWTVSLRYGKWQF--------GASDWTWLKDRPPGP---QGPEGGGLVAQLSPNE 481  Caulobacter cresce...
14521734 513 LDFMASDVQRKLVEYVK-----EGGSLVIMPMLPYLDEnmrecrilEEELGVKVSDEVARDnfrLIPYVSVDSDGIDRML 587  Pyrococcus abyssi
14590414 513 LDFMSREVQEKLIKYVE-----EGGNLVILPTLPYLDEnmkpctrlRDFLGVEVERAKARDnmrLIPYLSVDAEGIDRMV 587  Pyrococcus horikoshii
16264839 459 LVIAEEAFVERLTRAD--------AKVVFGARSGSKTR--------DMHIPEGLPPGPLAK---LIDISVSRVESLPEFH 519  Sinorhizobium meli...
15900005 446 -LIENMGRVNYGHKFLA-------DTQRKGIRTGVCKD--------LHFLLNWKHYPLPLDnpeKIDFSKGWTQGQPAFY 509  Streptococcus pneu...
15643079 464 LYMVGKELAQKLKDYVS-----NGGILILTTMSGIVDE--------DDQVVLGGYPGYLRD---LMGGYVEEIDALPPEE 527  Thermotoga maritima
15643951 463 LAIVKEEVLDTFKKYD--------GLLVLGPRSGSKTE--------TFQIPPEMPPGLLKE---IIPVEVRQVESLGDN- 522  Thermotoga maritima
15837442 466 -LVENSGRVNYGPHLAD-------G--RAGLIDPVMLN--------HERVNNWETFLLPLQtpeAIHGWTTAPMQGPAFH 527  Xylella fastidiosa...
15895779 768 ISVMVQNMGhdedgGCKDTHKSPRGLVQAslQGDTTSIFWSIQGNKGGETLIDPVRGAMNAGGLYGENNGWTLPNFPDKP 847  Clostridium acetob...
16077775 512 VNTGKAFG-------ITAPLGLWSAVFDT--ESGNTLGTVEAGPGAGHAFLTERNYGEGKIVMLGSLPSGKEGDAMLEAL 582  Bacillus subtilis
16125041 482 FLVTGRN----------VRVEFGRATADG---KPMMMARVEEGHFENGQWVFDRLWNGDQTDYGLNFTGGSQILRVKLAT 548  Caulobacter cresce...
14521734 588 VRNVVREVKgg-epIAWVGDKVVASLVRKg-KGSAIILGFRLQYYSSYHDMHRKFVDKILKLQGIERDFEVTDRDILVIP 665  Pyrococcus abyssi
14590414 588 VRNVAREVKgg-eaIAWIGDKVVGTIVRKg-KGSAVILGFRLQYYSSYHDMHRKFVDKILQLQGVKREVEVSNRDIIAIP 665  Pyrococcus horikoshii
16264839 520 SETVLYGNE-----A--YEAGGWRETVR---TSETVIASFDGEYRNGAPALVGSDK----ARYLAVAANGALLDKVIGDA 585  Sinorhizobium meli...
15900005 510 AYDFTVEEPk----DTYLDLSEFGKGVAF--VNGQNLGRFWNVGPTLSLYIPHSYLKEGANRIIIFETEGQYKEEIHLTR 583  Streptococcus pneu...
15643079 528 KNEILMFGKr-------YECSLVFDYIKT--TTAEVLGRFGRDYYMNEPAVLRNNYGKGWVYYVGSSTSFDLVWDLVKFM 598  Thermotoga maritima
15643951 523 VETLVWNGK-----E--YPVSIWREDVDP--TITEVIARFK----DGFGAIFRKEN----VFYLAFWPNGDFLVDFFEAL 585  Thermotoga maritima
15837442 528 RGTLLIRTPg----DTFLDMAAFSKGVTW--ANGHLLGRYWDIGPQRALYFPGAWQRQGENTVLVFDVSDTAAAQVRGVQ 601  Xylella fastidiosa...
15895779 848 WKQVTLPDNGKQrg-vAPGVSWYRTTFKLnfpkmsDVPLALYIKDNNTKNYRAyIYVNgwLIgQYINSLGPQNLFSLPSG 926  Clostridium acetob...
16077775 583 VRHYAEEAVISSrsdvTPGTIVAPRIGENg----lVWIVVNMDGKGGSVTLPE-SGTD--LLtHRLEKAGRLAVGPHEYR 655  Bacillus subtilis
16125041 549 Y------------------------------------------------------------------------------- 549  Caulobacter cresce...
14521734 666 RKDYLVLINPRGh--rVLGKVKYDDLEMPrl--leGIEMKTRGSLFLPLRKKIgEYEL--LYsTATLLRVEGNELTFRNH 739  Pyrococcus abyssi
14590414 666 RIHYLVLVNPRDe--eVAGKVKYRGVEFE-------IKMKGRGVLFIPVDVEInGVKL--VYaTATPIGGGNRRIKFRNH 734  Pyrococcus horikoshii
16264839 586 LGWAGLESLPDL----GDLRVTRR---GN------LRFAFNFGRIPAEVPAGA----------SAEFYVGGRTLKPVDVA 642  Sinorhizobium meli...
15900005 584 KPTLKHIKGENL-------------------------------------------------------------------- 595  Streptococcus pneu...
15643079 599 EREHNLRAEIAP----PDDVEVIKKIKGEk----iFYFLFNHSHELQIVDLPEgMFRD--LI-KGNLYEKKVKLQPLDVL 667  Thermotoga maritima
15643951 586 SKESGIETKRMP----EGVRIQRR---GE------YVFSFNFTSEEVDLEIPT----------KVQIVLGDQKIPPYGLL 642  Thermotoga maritima
15837442 602 QQRWITPRTGK--------------------------------------------------------------------- 612  Xylella fastidiosa...
15895779 927 VLDPN 931  Clostridium acetobutylicum
16077775 656 VIQFD 660  Bacillus subtilis
16125041     -----      Caulobacter crescentus CB15
14521734 740 LSNRS 744  Pyrococcus abyssi
14590414 735 LSDTS 739  Pyrococcus horikoshii
16264839 643 IWRE- 646  Sinorhizobium meliloti
15900005     -----      Streptococcus pneumoniae TIGR4
15643079 668 ILLKE 672  Thermotoga maritima
15643951 643 IWKEN 647  Thermotoga maritima
15837442     -----      Xylella fastidiosa 9a5c
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap