Conserved Protein Domain Family
NlpD

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COG0739: NlpD (this model, PSSM-Id:223810 is obsolete and has been replaced by 440502)
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain [Cell wall/membrane/envelope biogenesis]
Statistics
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PSSM-Id: 223810
Aligned: 147 rows
Threshold Bit Score: 67.1239
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
13472163   94 PDADTATKGHTVARPAELDSSGASPQIEILSDVMLSasekfmtTIPSTQEDFAFFKAqrqtaakpstaapddqqptspap 173  Mesorhizobium loti
9630157  1278 ksalesyisaseeatstqemnkqalveagtslenwtdqqekaneetktsmyvvdkykealekvnaeidkynkqvndypky 1357 Bacteriophage SPBc2
15792599   58 LKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNedllkskSNMEGKLISLMAKDfaydlpipqgyi----------- 126  Campylobacter jejuni
15645668   84 RPEIMGLEDKCLLYEIKANDWSYANFFNGNKASFKQevcvdtiKPSITILSRSPSIAyggsaivv--------------- 148  Helicobacter pylo...
15604169      --------------------------------------------------------------------------------      Rickettsia prowaz...
15925916      --------------------------------------------------------------------------------      Staphylococcus au...
2239274       --------------------------------------------------------------------------------      Staphylococcus au...
15644408    2 KRWLLLISLMVFSAVVFSFSAPVDSPRVSATFGEYRg------SGNRGPHFHMGIDFst--------------------- 54   Thermotoga maritima
17231499      --------------------------------------------------------------------------------      Nostoc sp. PCC 7120
16332170      --------------------------------------------------------------------------------      Synechocystis sp....
13472163  174 apaapndqpgdlandlqappdageipagsAPKADADDPEAGWGEtidqgeaalpafkktaiennttvatvtseyqrfaat 253  Mesorhizobium loti
9630157  1358 sqkyrdaikkeikalqqkkklmqeqakllkdqiksgnitqygivtsttssggtpsstggsysgkyssyinsaaskynvdp 1437 Bacteriophage SPBc2
15792599  127 -----------------eseesfmafeilGSLNKVLNEEIFKISkdyegvsrliddkqaqikkin--------------- 174  Campylobacter jejuni
15645668  149 ----------------------fealdknLSQAFVRVKKKDFEAfrllefkqrnvfialv-------------------- 186  Helicobacter pylo...
15604169      --------------------------------------------------------------------------------      Rickettsia prowaz...
15925916      --------------------------------------------------------------------------------      Staphylococcus au...
2239274     1 ----------------------------------------medvlymkkltaaaiatmgfatftmahqadsaettntqqa 40   Staphylococcus au...
15644408   55 ---------------------------glKEGVPIYASERGWLVr----------------------------------- 72   Thermotoga maritima
17231499      --------------------------------------------------------------------------------      Nostoc sp. PCC 7120
16332170      --------------------------------------------------------------------------------      Synechocystis sp....
13472163  254 edtfvkilndrsldsvaldahfsaddarlagealkglfkrdgleagfvvamrgfrpnretttmslMQVSVYARNVYVGTL 333  Mesorhizobium loti
9630157  1438 aliaaviqqesgfnakarsgvgamglmqlmpatakslgvnnaydpyqnvmggtkylaqqlekfggnvekalaaynagpgn 1517 Bacteriophage SPBc2
15792599  175 ---------------------------------------------eslkdynaqlaklqslkqkqISEINKQKTDRAIYA 209  Campylobacter jejuni
15645668  187 --------------------------------------------------pwsyknkdfkafivakDKAYNFNTAPLLFK 216  Helicobacter pylo...
15604169    1 ----------------------------------------------------------------mKYPVVLSLVVCFCLV 16   Rickettsia prowaz...
15925916    1 ----------------------------------------------------------mtkrpkrILATIIIFLSLLFTI 22   Staphylococcus au...
2239274    41 htqmstqsqdvsygtyytidsngdyhhtpdgnwnqamfdnkeysytfvdaqghthyfyncypknanangsgqtyvnpata 120  Staphylococcus au...
15644408   73 ----------------------------------------------------------------iEIDEDDIYGYTVVLE 88   Thermotoga maritima
17231499      --------------------------------------------------------------------------------      Nostoc sp. PCC 7120
16332170    1 -----------------------------mnsfwrtcrqkhwlsrnlsrprvrkcrlwslisllaLVMASSTLTIALASN 51   Synechocystis sp....
13472163  334 TRNAAGAFVSgvdpwvredLFNYSGASDQGGPKRQYRLLDAIYSTAARNkvptsvigeaimylsrgqdldafasedqrlv 413  Mesorhizobium loti
9630157  1518 vikyggippfketqnyvkkimanyskslssatsSIASYYTNNSAFRVSSky----------------------------- 1568 Bacteriophage SPBc2
15792599  210 KKLDDLQAQQeelr-ktlnQLKIINDKEDANSNKNDTKIVKNNQKIRQLgs----------------------------- 259  Campylobacter jejuni
15645668  217 RKIHRLREKDidlsalkdkIAKQEKFQNDTEQALLERFSNARPKDLEKIqki---------------------------- 268  Helicobacter pylo...
15604169   17 SCVDQPPAPI---------DYKVGDVTGNNHFTELDHDEGMIIQRNIEDts----------------------------- 58   Rickettsia prowaz...
15925916   23 IYIDDIQKWF---------NQYTDKLTQNHKGQGHSKWEDFFRGSRITEtf----------------------------- 64   Staphylococcus au...
2239274   121 gdnndytasqsqqhinqygyqsnvgpdasyyshsnnnqaynshdgngkvnypngtsnqnggsaskatrsghakdaswlts 200  Staphylococcus au...
15644408   89 HENGYRTLYAhl------sR-FSKKLETVASSLKQEFGNVRIVVNFPE-------------------------------- 129  Thermotoga maritima
17231499    1 -MIARETRSN---------TTARSSGWLSA-SFPVENFQAYTSAFGYRR------------------------------- 38   Nostoc sp. PCC 7120
16332170   52 NQVAAQYAPV---------ATSSTNPWQYA-SFPVENFQQYTSGFGPRR------------------------------- 90   Synechocystis sp....
13472163  414 miysqTPRDQGEISGRVLYVGVLGkdknldcfvfqqsdgqyacvtgddqvrslnvtngmvTPvAGVM-TSTFGPRKHPIL 492  Mesorhizobium loti
9630157  1569 ----gQQESGLRSSPHKGTDFAAK------------------------------------AGtA--I-KSLQSGKVQIAG 1605 Bacteriophage SPBc2
15792599  260 ----sYQGSSVKRYTGKKTIAPLD---------------------------------------SFTV-KQKFGNYVDPVY 295  Campylobacter jejuni
15645668  269 ---aleQGDFYKDFSHFQALKPLN-------------------------------------G-PFKM-ASNFLENRRILK 306  Helicobacter pylo...
15604169   59 ----iSGKVSDQLEELKAKMIEDD------------------------------------NDy---I-EMSMSRHG--DE 92   Rickettsia prowaz...
15925916   65 ----gKYQHSPFDGKHYGIDFALP------------------------------------KGtP--I-KAPTNGKVTR-I 100  Staphylococcus au...
2239274   201 rkqlqpygqyhgggahygVDYAMP------------------------------------ENsP--V-YSLTDGTVVQAG 241  Staphylococcus au...
15644408  130 ------KEIWFEKGEVVGYSGTTG---------------------------------------EAPIpHAHFEIRDRNEE 164  Thermotoga maritima
17231499   39 -----SATGGDGWEFHSGLDIAAP------------------------------------QGsY--I-RNWWAGTVIKVG 74   Nostoc sp. PCC 7120
16332170   91 -----APTAG-ASTFHNGLDLAAP------------------------------------LGsY--I-RNWWHGTVVEMS 125  Synechocystis sp....
13472163  493 GT----VRIHKGVDWAAP--VGTPVMAAFDGEISF-QGDGG-SY---GN---LVKITHANGRETRYAHMQkfAIASGIGT 558  Mesorhizobium loti
9630157  1606 YS----KTAG-NWVVIKQ--DD------GTVAKYM-HMLNTpSV---KA---GQ----------SVKAGQtiGKVGSTG- 1654 Bacteriophage SPBc2
15792599  296 NL----KIFNENVVLRSNk-SDAVVKNVLDGKIVF-AKDTS-ML---AR---VVIVEHDNGIHTIYAHLDkiAPNIKVGK 362  Campylobacter jejuni
15645668  307 NNqvlfKFLHLGVDLIPG--KDLSLAFDLSVKRVF-KGEFD-FY---GN---SLIHCYGLGLCVFLAHLKddKSVGSSGL 376  Helicobacter pylo...
15604169   93 AV----IEQLN--FVTPL--NG----VIINEFKVG-KSKG--ID--------------------IAVQEYsaVKSVAAGT 137  Rickettsia prowaz...
15925916  101 FN----NELGGKVLQIAE--DN------GEYHQWY-LHLDKyNV---KV---GD----------RVKAGDiiAYSGNTGK 151  Staphylococcus au...
2239274   242 WS----NYGGGNQVTIKE--AN------SNNYQWY-MHNNRlTV---SA---GD----------KVKAGDqiAYSGSTG- 291  Staphylococcus au...
15644408  165 VS----YDPSTFLNLPKPvdEDIVLEKIKIGDSVYdFVEGR-TYpfsGNfpdLAIKAYSKGFNNTLGLKKi-SLLLEGEE 238  Thermotoga maritima
17231499   75 DR----TACGT--HIVIK--SG------QWEHTYC-HMEGYvDT---AN---GR----------RFLIDRpgGIQIWEGQ 123  Nostoc sp. PCC 7120
16332170  126 DH----TGCGT--MVRIQ--SG------PWQHTYC-HLMGGvEV---HQ---GQ----------RYLVDRqgGIVLQQGQ 174  Synechocystis sp....
13472163  559 --KVKAGDV--IGYI---GTTGL--STGPHLH-FELY---ENGEAIDplgtvttvatavsvssggagdsavetltdrivh 625  Mesorhizobium loti
9630157  1655 --NSTGNHL--HLQI---EQNGKt-IDPEKYM-QGIG---TSISDAS--------------------------------- 1689 Bacteriophage SPBc2
15792599  363 --NIKKGAV--VGRIk-nDLTFEvtQKNFHINpLELIsln---------------------------------------- 397  Campylobacter jejuni
15645668  377 --KLGSGLH--LG-M---LLQGVfvRPNEWLN-EQWI---KTNITA---------------------------------- 410  Helicobacter pylo...
15604169  138 --VIYSGYN--KQFG---NLVIVk-LDADDLE-VAYA---RLDDLL---------------------------------- 171  Rickettsia prowaz...
15925916  152 --QTTGAHL--HFQR----MKG------------GVG---NAYAEDP--------------------------------- 175  Staphylococcus au...
2239274   292 --NSTAPHV--HFQR----MSG------------GIG---NQYAVDP--------------------------------- 315  Staphylococcus au...
15644408  239 iyQISFDQIpwSEFTnvwGVYDRk-SVSAAYR-FELWyklFPETFSSm-------------------------------- 284  Thermotoga maritima
17231499  124 --TIPTGAR--IGRV---GMTGR--TTGPHLH-WGLK---YANNYVD--------------------------------- 157  Nostoc sp. PCC 7120
16332170  175 --QVVAGMR--IGRV---GMTGR--TTGPHLH-WELR---HNGVLVD--------------------------------- 208  Synechocystis sp....
13472163  626 vesggsaraknpnssatgagqfitktwirmmntyrpdlarSLSTADLLALRYDATLSREMV 686  Mesorhizobium loti
9630157  1690 ----------------------------------------QAEAERQQGIAQAKSDLLSLQ 1710 Bacteriophage SPBc2
15792599      -------------------------------------------------------------      Campylobacter jejuni
15645668  411 ----------------------------------------PIEQAKRLLMKG--------- 422  Helicobacter pylori 26695
15604169  172 -----------------------------------------LKKGDKIAKNSIVGHVEHQL 191  Rickettsia prowazekii
15925916  176 ----------------------------------------KPFIEQLPDGERSLYDL---- 192  Staphylococcus aureus subsp. aureus ...
2239274   316 ----------------------------------------TSYLQSR-------------- 322  Staphylococcus aureus
15644408  285 ---------------------------------------iKVNKFPELGKAPDFAKYTVVI 306  Thermotoga maritima
17231499  158 ----------------------------------------PAMVLREMFSQQQIARGRGNV 178  Nostoc sp. PCC 7120
16332170  209 ----------------------------------------PALVLQAMYG--------GAT 221  Synechocystis sp. PCC 6803
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