Conserved Protein Domain Family
VacB

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COG0557: VacB (this model, PSSM-Id:223631 is obsolete and has been replaced by 440323)
Exoribonuclease R [Transcription]
Statistics
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PSSM-Id: 223631
Aligned: 62 rows
Threshold Bit Score: 310.477
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
19113103  122 GTMGPAVGELTSPVMKNRAeSIFSPVTESFEAFTQGMqttpqragagvstatshtrrrssagtdpfspvspsnPNFLTPL 201  fission yeast
15805061      --------------------------------------------------------------------------------      Deinococcus radio...
15795074   23 AAIIQKNDAT-YQVDTPHGkRTKVKANNVFAEFDG----------------------------------------DMAAF 61   Neisseria meningi...
15676206   14 AAIIQKNDAT-YQVDTPHGkRTKVKANNVFAEFDG----------------------------------------DMAAF 52   Neisseria meningi...
17547498    2 QLLFEEGGEIRAGTVLSQQgEAYQVELPSAKRAKVK---------------------------------------SRDVL 42   Ralstonia solanac...
19075629    1 --------------------------------------------------------------------------MNYRQL 6    fission yeast
15639792   19 VHAIERGKDAKITIETEHG--LRRVRVKDVLLLHPGT------------------------------------VSSLVEL 60   Treponema pallidum
134917    341 FAPYLPQANIPELIQEGRLvAGILRVNKKNRSDAWVStdgaldadiyicg-----------skdrnralegdlVAVELLV 409  baker's yeast
17231942   18 GVVDRPDGKTRWFVVDERGqSHSLAPRQITYTVNGNTy----------------------------------kPSEIDRF 63   Nostoc sp. PCC 7120
7674330    18 AVVDRPDGKKDWVVIDQQGqSHKLKPQRVEYEIPGGPy----------------------------------tVDDLPSF 63   Synechocystis sp....
19113103  202 KPIdgNQEWQQSPLESPLSMHSLQESLhsvepespifqqaPQIPLSNASQQSYiNHSSDGASlpqssflnfnssgkrvsv 281  fission yeast
15805061      --------------------------------------------------------------------------------      Deinococcus radio...
15795074   62 LEN--AQAQAADIDTDLLWEVCGEE-----------------EFTAEAIAEEY-YGHAPTKTe----------------- 104  Neisseria meningi...
15676206   53 LEN--AQAQAADIDTDLLWEVCGEE-----------------EFTAEAIAEEY-YGHAPTKTe----------------- 95   Neisseria meningi...
17547498   43 LQF--AQPSAGELAQAAQALSSEIDLD-------------FLWECAPAEEFGFtDLAGEYFG------------------ 89   Ralstonia solanac...
19075629    7 FLLqnVNLESNYLLKRVCLSLKLSPCK-------------LTRKFHHACPSSS-KVLKYFR------------------- 53   fission yeast
15639792   61 LSAshIARISEESVQDAREFFGTEAPSf------------FELAELLWGASAAqSWAYWEQS------------------ 110  Treponema pallidum
134917    410 VDDvwESKKEKEEKKRRKDASMQHDLIplnss----ddyhNDASVTAATSNNFlSSPSSSDSlskddlsvr--------- 476  baker's yeast
17231942   64 LEE--VKPYLDPSSLEVAWELLVEDG----------------ETVTPSQMANL-LFSESNSAp----------------- 107  Nostoc sp. PCC 7120
7674330    64 LGE--VDQYLDPSSLEVAWELLIEEG----------------ESITPADLALL-LFSEQSPSq----------------- 107  Synechocystis sp....
19113103  282 saaaqqhknlflpylpqaslpkfigtgkllvgtlhinrKNRSDAYVITDVldepificgskdRNRTLEGDLVAVELldvn 361  fission yeast
15805061      --------------------------------------------------------------------------------      Deinococcus radio...
15795074  105 --------------------------------------LAATLIALYAAP------------MYFYKKAKGVFK------ 128  Neisseria meningi...
15676206   96 --------------------------------------LAATLIALYAAP------------MYFYKKAKGVFK------ 119  Neisseria meningi...
17547498   90 -----------------------------------------TDADATQQAa-----------LAIALHGSPVYFR----- 112  Ralstonia solanac...
19075629   54 --------------------------------------ITGCLINFGKQP------------ANDHHLWGHCGARLk--- 80   fission yeast
15639792  111 ---------------------------------------VQSAYFVCNEPa-----------AAVRIRSQQECASCa--- 137  Treponema pallidum
134917    477 ------------------------------rkrsstinNDSDSLSSPTKSgvrrr--sslkqRPTQKKNDDVEVEGqsll 524  baker's yeast
17231942  108 --------------------------------------SYAAHCLLSDDK------------LYFKQKGDAYEPRT---- 133  Nostoc sp. PCC 7120
7674330   108 --------------------------------------CYAAHALLAEDK------------LYFKQKGNHYEPRP---- 133  Synechocystis sp....
19113103  362 eIMQTKREkeekkirrnlslsgsskysvnskakmmsistpmalgmnrgvlsfersiekrkndyevtgqslsfvddvsLtp 441  fission yeast
15805061      --------------------------------------------------------------------------------      Deinococcus radio...
15795074  129 -AAPEETLkq------------------------------------------------------------------aLaa 141  Neisseria meningi...
15676206  120 -AAPEETLkq------------------------------------------------------------------aLaa 132  Neisseria meningi...
17547498  113 -----RKG------------------------------------------------------------------------ 115  Ralstonia solanac...
19075629   81 hTQSDLIDr----------------------------------------------------------------------- 89   fission yeast
15639792  138 -VQEEKKEa--------------------------------------------------------------------Rq- 147  Treponema pallidum
134917    525 lVEEEEINd--------------------------------------------------------------------Kyk 536  baker's yeast
17231942  134 -AAQVADRkh------------------------------------------------------------------qIev 146  Nostoc sp. PCC 7120
7674330   134 -SSQIEEIkh------------------------------------------------------------------qMrv 146  Synechocystis sp....
19113103  442 dsapKYAGHVVAVLNrpsgETCSGTLALYRPNSLalknqsshrrnsstssgetgkgpkIVWFKPSDKRIP---LIAISSD 518  fission yeast
15805061    1 ---------------------------------------------------------------------------MTQPE 5    Deinococcus radio...
15795074  142 --ieRKKQQDAQIDA----WAEALKRGEMPSEIAa----------------------dLKTILHAPDK-------QSLT- 185  Neisseria meningi...
15676206  133 --ieRKKQQDAQIDA----WAEALKRGEMPSEIAa----------------------dLKTILHAPDK-------QSLT- 176  Neisseria meningi...
17547498  116 ------RGRYQRAPEd---QLKAALAGLERKKQQ------------------------AAQQAAYEAELK---AMRLPEA 159  Ralstonia solanac...
19075629   90 ----FKNANLKSVNE----ENLKKFFSELENHGN------------------------IRQWLKDKFEKDk--RAAVCPT 135  fission yeast
15639792  148 ----ALKQAFIQELR----RVARSARNMAPTAQEgm---------------------hRVHVSQVNEQFT---PFLQEIE 195  Treponema pallidum
134917    537 plyaGHVVAVLDRIPg---QLFSGTLGLLRPSQQansdnnk-----------ppqspkIAWFKPTDKKVP---LIAIPTE 599  baker's yeast
17231942  147 --eaLKARGQQEFLT----RVEQALQGEAVEWQRh----------------------dRQRLEGLEKYGTllaDIVKVGL 198  Nostoc sp. PCC 7120
7674330   147 --qaQKEQEQQGFID----RVNQALAGEKVTWEGs----------------------dRLRLEALEKF------ILFPEQ 192  Synechocystis sp....
19113103  519 QVPptfftnnDDFKDKVFLAGIKRWPTT---SLHPFGTLYESIGTIGDPKVEYKAILHDFSCHTYd--FPESLSHCVKRL 593  fission yeast
15805061    6 LTP-----------AQRTEVELLARGRA----D--KSRVLRDLKLPETPEAAHALLLRLGVWDEArtpYADRLRAALNAV 68   Deinococcus radio...
15795074  186 -YK-----------------AFTKAAD------ALKTSAYELAKKTGGITSIP-QYLQDG--------FEIKYFPKGTGF 232  Neisseria meningi...
15676206  177 -YK-----------------AFTKAAD------ALKTSAYELAKKTGGITSIP-QYLQDG--------FEIKYFPKGTGF 223  Neisseria meningi...
17547498  160 FRG--------------KALQLLFKPDKnsiEFKAFDAACTALGMSPMRLMVAVGGIANARALHEa-rFLSECFPKGIGF 224  Ralstonia solanac...
19075629  136 TTK-------SEEEKLENDFEYSFDLED----FSSENFRQYDRGDLLVFYRGSEGIELAACTGTN---VWNYSNVLTSIN 201  fission yeast
15639792  196 AFA----------LGHANRCKILQCALGc-eHREQAHEILLHFGFWPVYRNPYPDRLCPLFLSPAh--VSGSDGERAAQQ 262  Treponema pallidum
134917    600 LAPkdfvenaDKYSEKLFVASIKRWPIT---SLHPFGILVSELGDIHDPDTEIDSILRDNNFLSNe-yLDQKNPQKEKPS 675  baker's yeast
17231942  199 NYDsl---arAYPPPAPVLETMNMLGRP-----ATPQGAFQLLVDLGWWSATENLFLRRSSIPVQ---FPSKVLEVAQQR 267  Nostoc sp. PCC 7120
7674330   193 NHR-------------QALDILQTLGKP-----GRTDETQNLLIELGIWQRHENLFLRRSAYPNQ---FPAKVSDVAHAY 251  Synechocystis sp....
19113103  594 PTPIPAE-----ELQKRYNLRDKLTFMIG---TRDYALHIDTGS-IDGVITLGIHVADVAYYVKQDMPLDDEAANRVSEV 664  fission yeast
15805061   69 ELPVPDFd----PAEERLDLTHLPTFAIDdegNQDPDDAVGVEDlGGGLTRLWVHVADVAALVAPDSPLDLEARARGATL 144  Deinococcus radio...
15795074  233 PDLPLPEm----PDLPKADVT---AFSIDdesTTEVDDALSLTDlGNGIKRVGIHIAAPSLAIKQGDKMEKNIMERLSTV 305  Neisseria meningi...
15676206  224 PDLALPEm----PDLPKADVT---AFSIDdesTTEVDDALSLTDlDNGTKRVGIHIAAPSLAVKPGDKMEKNIMERLSTV 296  Neisseria meningi...
17547498  225 PDVTVPEp---aLDLPVADVR---AFSIDdvtTTEIDDAISVTPlDAATVRIGIHIAAPGFGIQRGEALDAIARQRLSTV 298  Ralstonia solanac...
19075629  202 ENGTIKE-----FRTSRVLLRCPNVFKKLkevQQPLSDVSVPSD------VLPFTIKLLKKISQRAQDLSRSHRNEFLRI 270  fission yeast
15639792  263 DVHTHRC-----VTQARTDCTHLAAYAIDgegTRDPDDAISFD---G--TYFWIHVASPAELVLPDSHADACARTRGRSL 332  Treponema pallidum
134917    676 FQPLPLTaesleYRRNFTDTNEYNIFAISe-lGWVSEFALHVRNnGNGTLELGCHVVDVTSHIEEGSSVDRRARKRSSAV 754  baker's yeast
17231942  268 LDFP-PTd----LDTNRLDLTHLKVYTVDdesTTEIDDGLSWEKlPDDRERLWVHIADPTRYLAPEDDLDLEARKRGSTV 342  Nostoc sp. PCC 7120
7674330   252 LTNP-PPd----PDQERFDLTTLKTYTIDdesTSEIDDGLSVETlADGGHRLWIHVADPTRLLSPNDELDLEARKRSTSL 326  Synechocystis sp....
19113103  665 QLL-QGSVPFLPKKVSEE-ISLIEGHDCLTISIVVQLDlKSGAVLQCSLGPSVIHPSSFISLESAQANLQT--------- 733  fission yeast
15805061  145 YLP-DRTIGMLPDELVAK-AGLGLHEVSPALSICLDLD-PDGNAEAVDVLLTRVK-VQRLAYQEAQARLEA--------- 211  Deinococcus radio...
15795074  306 YFP-GGKITMLPENWIAA-FSLDAGTYRPSISIYFDVD-NEFNVGAPTCKIEAVNIAENLRIQAIEPHFNAe-------- 374  Neisseria meningi...
15676206  297 YFP-GGKITMLPENWIAA-FSLDAGAHRPAVSIYFDVD-GEFNVGAPTCKIEAVNIATNLRIQAIEPHFNAe-------- 365  Neisseria meningi...
17547498  299 YFP-GDKITMLPESVVDR-YTLQEGRACPALSLYVTVDrATWAVSASETRCEIVTVAANLRHNLLDEIVTAealaagtgd 376  Ralstonia solanac...
19075629  271 LTEfNIPNKLDNSASFSDlLKFVYKTSKPSPYAKISLLhFLLTESKHFLISDHIFSEIQKVYFLPSSQNDSf-------d 343  fission yeast
15639792  333 YLP-EGAVRMLSDVVVDT-CALARDAVSPALSFKILLD-EHGDISCVHVLRSMVR-VTRLSYAEADSQRD---------- 398  Treponema pallidum
134917    755 FMP-QKLVNLLPQSFNDe-LSLAPGKESATLSVVYTLDsSTLRIKSTWVGESTISPSNILSLEQLDEKLSTg-------- 824  baker's yeast
17231942  343 YLP-TGMIPMFPEVLATGpMSLVQGRVCCALSFGVVLD-GTGAVQDFTIHPSLIKPTYRLTYEDVDEMLELgv------- 413  Nostoc sp. PCC 7120
7674330   327 YLP-TGMISMFPPELATGpMSLLQGQRCVALSFGVTLD-EVGAVRDFTIAPSWVKPTYRLTYEDVDEMLVLki------- 397  Synechocystis sp....
19113103  734 NEALQLVDASAHVLTkLRLKTDKKLDLQSL--YCFEFCDgQIPNIQN----------INMSIFEAF-PIACSLQQIEHWV 800  fission yeast
15805061  212 -G----EEPFVTLAR-LARASRRLREGEGA--LSIDLPE-VRVKADEt--------gASVFPLPKP-EMRTVVQECMTLA 273  Deinococcus radio...
15795074  375 ----aGLDEAGEMMF-AHHQDLIWFY---Q--FATALQK-ARGKYEPdr-------aPQYDYSIEL-DKEDNVSVVRRER 435  Neisseria meningi...
15676206  366 ----tGLDEAGEMMF-AHHQDLIWFY---Q--FATALQK-ARGKYEPdr-------aPQYDYSIEL-DEEGKVSVVRRER 426  Neisseria meningi...
17547498  377 YPFKDELAVLWPFAGaLYDARQQARIASGLkpEGAQKGD-YSFYLDPipeaegggerIRIEQRKRGsPLDKIVAELMILA 455  Ralstonia solanac...
19075629  344 DVVACLRQKSTPYLSfIKKARHLIQVSRDKykLPISTEEiKPVVYSQ----------VTWTEFEKK-LLRYLVQEMIAKS 412  fission yeast
15639792  399 ------TPALQPLFD-FARNNIARRKGRGA--VDICFPD-VHMRVDFpvqet-gqagKEMNAGDVP-DTQGKVPRVHIEA 466  Treponema pallidum
134917    825 -----SPTSYLSTVQeIARSFYARRINDPEa-TLLPTLS-LLESLDDek------vkVDLNILDRT-LGFVVINEIKRKV 890  baker's yeast
17231942  414 ----qAEPEIAAIAT-WATKRKSWRYNQGA--ISINMPE-AMIKVKNd--------dISIDILDDS-RSRQLVAEMMILA 476  Nostoc sp. PCC 7120
7674330   398 ----qGEPELPLLAE-AAKKRAQWRKSQGA--ITIKMPE-AIIKVNAde-------eVQIYLQETS-VSRQLVAEMMILA 461  Synechocystis sp....
19113103  801 N-EKVASHLMSVFpSKvILRKNQRPSD--FASLVAVSELTGVNLSASST----PSEIMTEIATTK--DKRTKMLLQLTLR 871  fission yeast
15805061  274 G-WGTAIFADDNEiPL-PFATQDYPTR------EVAG----------------DTLPAMWARR-------K--TLARTRF 320  Deinococcus radio...
15795074  436 GsPIDTLVSEMMIlAN-STWAQMLH---------DNDLPG-------------L-FR--VQPTGK--------VRMSTKS 481  Neisseria meningi...
15676206  427 GsPIDTLVSEMMIlAN-STWAQMLH---------DNDLPG-------------L-FR--VQPTGK--------VRMSTKS 472  Neisseria meningi...
17547498  456 N-STWGRMLADAGvPG-IYRTQKAWGMhrTRMQTYPAPHEGLGVAQYAWstspLRRYVDLVNQWQiaAVAQHGVMAKLVA 533  Ralstonia solanac...
19075629  413 IqSLPNTHLCQVY-KEvGLQTHERGLTs--DQFAKFLTDIGVWASWQPPrl-fQQEYSIAGLGTN---PQLDAVYERECN 485  fission yeast
15639792  467 Q--QSYESMSMVR----EFMLLAGEAAa----rFAFLHNLAFPYVSQER----P-QLPVQLPAG--------LAGEYKKR 523  Treponema pallidum
134917    891 N-STVAEKIYTKLgDLaLLRRQMQPIAtkMASFRKKIQNFGYNFDTNTAdeliKGVLKIKDDDVR---VGIEILLFKTMP 966  baker's yeast
17231942  477 G-EVAARYGQVHNiPL-PFRGQPQP---------ELPPED-------------E-LL--RLPAGF--------VRACAMR 521  Nostoc sp. PCC 7120
7674330   462 G-EVAGRFCQEHGiPV-PFRGQPQP---------ELPSDE-------------E-LL--SLPPGP--------VRECAVR 506  Synechocystis sp....
19113103  872 RMCN--ESEYTIGtsnakDVSHFVFSCPY-YTHFCHPTRRYIDICVQRQLREAFDGRPDFSKDYr---SLLSITQSCNTL 945  fission yeast
15805061  321 QPSP---------------GPHHGMGLDL-YAQATSPMRRYLDLVVHQQLRAFLAGRDPLSS--------KVMAAHIAES 376  Deinococcus radio...
15795074  482 --EP-----------------HIGMGVRH-YGWFTSPLRRAADYINQKQLISLIDDTAEPLYQN----SDAELFAALRDF 537  Neisseria meningi...
15676206  473 --EP-----------------HIGMGVQH-YGWFTSPLRRAADYINQKQLISLIDDTAEPLYQN----SDAELFAALRDF 528  Neisseria meningi...
17547498  534 PFKP--KDADLLA-----AVADFEATYAA-YAAHQSTMERY---WCLRWLKQEAR---------------TRTQAVVLKE 587  Ralstonia solanac...
19075629  486 HFKKfvKNELKDSl----ESQRVDLRHLKaFAFDSSSTKEIDDAISVEELGMSNSWLHIHVANP-----TSTVDIRSPLG 556  fission yeast
15639792  524 RAMK--ARRVSTT-----AAVHAALGLSQ-YSQVTSPLRRYVDLLAHQQLLACIDHAYAKAPAVgsaqTNETLALKLAQA 595  Treponema pallidum
134917    967 RARYfiAGKVDPD-----QYGHYALNLPI-YTHFTAPMRRYADHVVHRQLKAVIHDTPYTED-------MEALKITSEYC 1033 baker's yeast
17231942  522 RCMPk--SEMSIT-----PVRHAGLGLDT-YTQATSPIRRYSDLLTHFQLKAHLRGEVPPFTA-------EELKEVMMTV 586  Nostoc sp. PCC 7120
7674330   507 RCMPr--SEVGIT-----PSRHASLGLDL-YSQATSPIRRYTDLITHFQMKAYLRGEPLPFSG-------EQVQEILYSV 571  Synechocystis sp....
19113103  946 SNFYRNAQEKSLH--AYLCQLLHSINLRSGl---VKHKAFVLAVDQEYIDIVIYEFgLERRISLDLLPLsncdfneqkhe 1020 fission yeast
15805061  377 QMNADATRQAERL--SRRHHTLRFIAAQPE----RVWDAVVVDRRGAQATLLIPDLaFDVQVNTPAAPG----------- 439  Deinococcus radio...
15795074  538 DAAYTAYADFQRQ--MEAYWSLVYLQQQGT----SELTATIL----KEDLVRIEGLpLVTRATGIPFD------------ 595  Neisseria meningi...
15676206  529 DAAYTAYADFQRQ--MEAYWSLVYLQQQGT----SELTATIL----KEDLVRIEGLpLVTRATGIPFD------------ 586  Neisseria meningi...
17547498  588 GMVRFAEIPLMTR--VPELAQTARGTHVVL----DVLEIDEIGLEVSCRVVEVLAPaADAEVEAAALED----------- 650  Ralstonia solanac...
19075629  557 TFAERNFQTIYHPnkIVYMLPLNITQKYWS----LDSSSTAQRALTFSAKISKNGDiLDYKVRPSFISSv---------- 622  fission yeast
15639792  596 DEAARQATQAERV--SRRHWTLVYFLMHPH----TRYEAIVLEPLQPRAHVWLPAVaLEADVALGRQAQf---------n 660  Treponema pallidum
134917   1034 NFKKDCAYQAQEQ--AIHLLLCKTINDMGNttgqLLTMATVLQVYESSFDVFIPEFgIEKRVHGDQLPLikaefdgtnrv 1111 baker's yeast
17231942  587 TSTTQELTMVERQ--TNRYWALEYLRRHPE----EIWQVTVLMWLREDSNLALILLeDLGLQLPMVFKR----------- 649  Nostoc sp. PCC 7120
7674330   572 MPSSKEATLVERQ--TNRYWSLEFLRRNIN----EVWQGVMLRWLREDDGLGLILLeELGLELPHRFDR----------- 634  Synechocystis sp....
19113103 1021 LYLSWRTNAs---FFYASSSLEIDTPCFNDFKKKFLDSNGmckqICDMMDAQVRDL 1073 fission yeast
15805061  440 ----------------TALQVQFADIDLPQMRVRARSV------------------ 461  Deinococcus radiodurans
15795074  596 -ALPKSQ---------ALFKITELDAEKQFVSLNYIKAVA----PAGTTAGNAV-- 635  Neisseria meningitidis Z2491
15676206  587 -ALPKSQ---------ALFKITELDAEKQFVSLNYIKAVA----PAGTTAGNAV-- 626  Neisseria meningitidis MC58
17547498  651 ELAQAEA---------EAPAEPQPAADGEEIRAETGDAVA----PPQQDDGTSAAS 693  Ralstonia solanacearum
19075629  623 IKYTPQQLD----KALHSNRSIAKDIVSGPVDEETKGVSN----DHMKDILRIYEL 670  fission yeast
15639792  661 ERVMLRVVR------VRLATLEVHFSVCEHCHRGVTQAVEge-aEQPSXEEYVFGS 709  Treponema pallidum
134917   1112 LELHWQPGVdsatFIPADEKNPKSYRNSIKNKFRSTAAEIanieLDKEAESEPLIS 1167 baker's yeast
17231942  650 SVRLGEQ---------VLVKVSISDPQKDVIQFQ--EIIY----QEAQTAAN---- 686  Nostoc sp. PCC 7120
7674330   635 PISPGDR---------LSLKVSNADPHRDEIRFR--ELLA----NEA--------- 666  Synechocystis sp. PCC 6803
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