1N3J,3QXY,1MVX,3BO5


Conserved Protein Domain Family
SET

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pfam00856: SET (this model, PSSM-Id:216155 is obsolete and has been replaced by 425911)
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SET domain
SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.
Statistics
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PSSM-Id: 216155
Aligned: 279 rows
Threshold Bit Score: -1
Created: 21-Dec-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1N3J_B        15 GYGVFARKSFEKGELV----EECLCIVRHNDDWGTA------LED---------YLFSRKNMSAMALGFGAIFNHSKDPN 75  Paramecium burs...
Q0ARF1        15 GLGVFASQTIPAGTLVwvldPAVDLILTEAQLAERPqi--yrQFMqr-----yaYFDRSLNGYLLDGDHARFLNHAAEPN 87  Maricaulis mari...
Q985K0        25 GIGVFAKHHIPMGTLIwkldPRFDRIIDVETYEGESgpv-knYLDry-----syPDRRDPAYIVFEADDARYMNHDDEPN 98  Mesorhizobium loti
Q04W45        15 GFGLFAGRDIQKGELIwkyhPKTVWVLTDQELNSLPls---vQEMfr------iYSYQTAGKWFYCSDNSKFMNHSDDPN 85  Leptospira borg...
Q9ANB6        15 GIGLFSATRLPKGSLIwihnPIVDITVTPEQYEALAptfqalLDKhay----prDYKAYDGVIEYNADNARFMNHSSRPN 90  Bradyrhizobium ...
XP_001312747  87 GFGLFTTEKLRAQENLi---DITCPVVRTSVAEMRYqky---kkInpnisfiiqIDENNYVDLTNIRTPARYLNHSCESN 160 Trichomonas vag...
YP_863569     16 GFGVVATALIPKGTITwv-qDELDSVFPPETPDRLKpi--trDHLek------ySFRNNKGEHILCWDIAKYMNHSFSSN 86  Gramella forset...
ZP_01852235   16 GYGVVATEFIPAGSITwv-lDKLDREFSSLEFQSMEdi--yqNILdt------ySFRNNQGNLVLCWDNGRYVNHSFNSN 86  Planctomyces ma...
ZP_00957747   15 GVGVFAAEPIRAGQMIyrfaPEFDRLIALAELDSLPesi-rrFVDry-----tyPYPGKPDVLVLDADNGRHMNHSLTPN 88  Oceanicaulis al...
CAM76443      15 GIGLFAGENIAKGTVIwrfdERVDRRFTQAERDALPepa-rsFLRty-----syPEEVGSPIYLLDGDHARFFNHSDQPN 88  Magnetospirillu...
Q0ARF1        15 GLGVFASQTIPAGTLVwvldPAVDLILTEAQLAERPqi--yrQFMqr-----yaYFDRSLNGYLLDGDHARFLNHAAEPN 87  Maricaulis mari...
Q985K0        25 GIGVFAKHHIPMGTLIwkldPRFDRIIDVETYEGESgpv-knYLDry-----syPDRRDPAYIVFEADDARYMNHDDEPN 98  Mesorhizobium loti
Q04W45        15 GFGLFAGRDIQKGELIwkyhPKTVWVLTDQELNSLPls---vQEMfr------iYSYQTAGKWFYCSDNSKFMNHSDDPN 85  Leptospira borg...
Q9ANB6        15 GIGLFSATRLPKGSLIwihnPIVDITVTPEQYEALAptfqalLDKhay----prDYKAYDGVIEYNADNARFMNHSSRPN 90  Bradyrhizobium ...
XP_001312747  87 GFGLFTTEKLRAQENLi---DITCPVVRTSVAEMRYqky---kkInpnisfiiqIDENNYVDLTNIRTPARYLNHSCESN 160 Trichomonas vag...
YP_863569     16 GFGVVATALIPKGTITwv-qDELDSVFPPETPDRLKpi--trDHLek------ySFRNNKGEHILCWDIAKYMNHSFSSN 86  Gramella forset...
ZP_01852235   16 GYGVVATEFIPAGSITwv-lDKLDREFSSLEFQSMEdi--yqNILdt------ySFRNNQGNLVLCWDNGRYVNHSFNSN 86  Planctomyces ma...
ZP_00957747   15 GVGVFAAEPIRAGQMIyrfaPEFDRLIALAELDSLPesi-rrFVDry-----tyPYPGKPDVLVLDADNGRHMNHSLTPN 88  Oceanicaulis al...
CAM76443      15 GIGLFAGENIAKGTVIwrfdERVDRRFTQAERDALPepa-rsFLRty-----syPEEVGSPIYLLDGDHARFFNHSDQPN 88  Magnetospirillu...
1N3J_B        76 ARHELTa--gLKRMRIFTIKPIAIGEEITISYG 106 Paramecium bursaria Chlorella virus 1
Q0ARF1        88 IDFR-------ADGNGEARREILPGEEILCDYS 113 Maricaulis maris MCS10
Q985K0        99 CDVS-------SPEETYALRDIAPGEELTCNYN 124 Mesorhizobium loti
Q04W45        86 TKEDFTseqtNPMGQDIATRLILKGEELTCNYK 118 Leptospira borgpetersenii serovar Hardjo-bovis JB197
Q9ANB6        91 TYQD--------DRRVFTARDVQPGEELTCNYL 115 Bradyrhizobium japonicum
XP_001312747 161 CQLKLAssksSATVSIVAKRDILPYEELTLDYG 193 Trichomonas vaginalis G3
YP_863569     87 CLST-------AQNFEIAVRDIQIDEELTDDYG 112 Gramella forsetii KT0803
ZP_01852235   87 CLTT-------AYDFEIAIRDIHPGEQLTDDYG 112 Planctomyces maris DSM 8797
ZP_00957747   89 TDFR-------DSVYGYAIADIAPGEEITCNYS 114 Oceanicaulis alexandrii HTCC2633
CAM76443      89 TDC---------VVDTIATRDIVAGEELLCDYN 112 Magnetospirillum gryphiswaldense MSR-1
Q0ARF1        88 IDFR-------ADGNGEARREILPGEEILCDYS 113 Maricaulis maris MCS10
Q985K0        99 CDVS-------SPEETYALRDIAPGEELTCNYN 124 Mesorhizobium loti
Q04W45        86 TKEDFTseqtNPMGQDIATRLILKGEELTCNYK 118 Leptospira borgpetersenii serovar Hardjo-bovis JB197
Q9ANB6        91 TYQD--------DRRVFTARDVQPGEELTCNYL 115 Bradyrhizobium japonicum
XP_001312747 161 CQLKLAssksSATVSIVAKRDILPYEELTLDYG 193 Trichomonas vaginalis G3
YP_863569     87 CLST-------AQNFEIAVRDIQIDEELTDDYG 112 Gramella forsetii KT0803
ZP_01852235   87 CLTT-------AYDFEIAIRDIHPGEQLTDDYG 112 Planctomyces maris DSM 8797
ZP_00957747   89 TDFR-------DSVYGYAIADIAPGEEITCNYS 114 Oceanicaulis alexandrii HTCC2633
CAM76443      89 TDC---------VVDTIATRDIVAGEELLCDYN 112 Magnetospirillum gryphiswaldense MSR-1
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