1NLW,1AM9,1A0A


Conserved Protein Domain Family
HLH

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pfam00010: HLH (this model, PSSM-Id:215654 is obsolete and has been replaced by 333763)
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Helix-loop-helix DNA-binding domain
Statistics
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PSSM-Id: 215654
View PSSM: pfam00010
Aligned: 171 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 21-Dec-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1NLW_A        1 SRSthNEMEKNRRAHLRLSLEKLKGLVPLgP--------------------------------------DSSR-HTTLSL 41
gi 75294400 100 QKMshVTVERNRRKQMNEHLTVLRSLMPC-F--------------------------------------YVKR-GDQASI 139
gi 75309922  66 KKLnhNASERDRRRKLNALYSSLRALLPLsD--------------------------------------QKRK-LSIPMT 106
gi 75311783  77 KKLnhNASERDRRRKINSLFSSLRSCLPA-Sg-------------------------------------QSKK-LSIPAT 117
gi 75313902  12 RSVdrKTVEKNRRMQMKSLYSELISLLPH-H--------------------------------------SSTEpLTLPDQ 52
gi 75309184   2 EKMmhRETERQRRQEMASLYASLRSLLPLhF--------------------------------------IKGK-RSTSDQ 42
gi 75311390  75 KRAkhKELERQRRQENTSLFKILRYLLPSqY--------------------------------------IKGK-RSSADH 115
gi 75311449  74 KKMkhRDIERQRRQEVSSLFKRLRTLLPFqY--------------------------------------IQGK-RSTSDH 114
gi 128830   668 KRTshKIAEQGRRNRINSALQEIATLLPK-ApakeggdgdgdghsssgggggsggadredkrekdkdkaGGGIpNSKAST 746
1A0A_A        2 KREshKHAEQARRNRLAVALHELASLIPA-Ewkq---------------------------------qnVSAA-PSKATT 46
                        90
                ....*....|..
1NLW_A       42 LTKAKLHIKKLE 53
gi 75294400 140 IGGVVEYISELQ 151
gi 75309922 107 VARVVKYIPEQK 118
gi 75311783 118 VSRSLKYIPELQ 129
gi 75313902  53 LDEAANYIKKLQ 64
gi 75309184  43 VNEAVNYIKYLQ 54
gi 75311390 116 VLEAVNYIKDLQ 127
gi 75311449 115 IVQAVNYIKDLQ 126
gi 128830   747 VEMAIEYIKQLQ 758
1A0A_A       47 VEAACRYIRHLQ 58
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