1WAW,1ITX,2WLY,1D2K,1H0G,1KFW,3ALF,1JND,3BXW


Conserved Protein Domain Family
Glyco_18

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smart00636: Glyco_18 
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Glyco_18 domain
Statistics
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PSSM-Id: 214753
View PSSM: smart00636
Aligned: 215 rows
Threshold Bit Score: 85.0375
Threshold Setting Gi: 544016
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1WAW_A      2 KLVCYF-TNWA----QYRQgeaRFLPKDLDPSL---CTHLIYAFAGMT----NHQLST-------TE--WNDET------ 54   human
Q9GV28     24 KVLCYY-DSRSyv--reSqa--rMLPLDLDPALs-fCTHLLYGYAVIQpd-tYKLVSL-------NE--NLDIdr----- 82   domestic silkworm
Q9W3V1     68 RLVCYY-ASDGth---------nLSLLDVPGDL---CTHINIGPATLDn--aTIVLPDt-------------lR------ 113  fruit fly
Q18143    373 TRLCYL-DPEEve--------etFPIDNLKSDY---CSHIVVPYFALDls-dKMIEEDk--------------------- 418  Caenorhabditis el...
Q90184    128 ELWCGY-DNSAmy--rtG-----FPINPSMPKQyskCTGIIYNKVILTt-----nEK--------NR--DPRypkmqsyv 184  Salmonid herpesvi...
Q9Z9M9    282 AVTGYW-QNFNngatVQK-------ISDVPSAY----DIIAVAFADATtt-pGAVTFNldsaglgGY--TVD-------- 338  Streptomyces coel...
Q9FAC9     35 LLVGYW-HNFDn-----Gtg--iIKLKDVSPKW----DVINVSFGETGgd-rSTVEFSpv------------yG------ 83   Bacillus cereus
Q9RHU3     58 AVTGYW-QNFNngatVQK-------LSDVPADY----DIIAVAFADATtt-pGAVAFNldsaglgGY--TVD-------- 114  Streptomyces ther...
Q9S5K1    278 ALVGYLhASFAn-----Gsg--yTRMADVPDSW----DVIDLAFGEPTsvtsG--DIRfercp-----vaecpN------ 333  Streptomyces coel...
CBA35206   30 KLVCFY-DAQS----FVREgpaQMSLAELEPALq-fCNFLVYGYAGIDav-tYKIKSL-------DPslTNDRQ------ 89   fruit fly
1WAW_A     55 -------LYQE--FNGLKKMn--PKLKTLLAIGGW--------NF---GtQKFTDMVAtANNRQTFVnSaIRFLRKYs-F 111  human
Q9GV28     83 ------tHDNYraITSLKAKy--PGLTVLLSVGGD--------ADteeP-EKYNLLLEsQQARTAFInSgVLLAEQYg-F 144  domestic silkworm
Q9W3V1    114 -------QVLQndTRSFRAa--hPQVHLLLWIGG---------ADs---gRSFALMVAnhAMRKLFLrSlREILRTYpsL 172  fruit fly
Q18143    419 ------aEDLVkkIDDWRSKiveVAPRLILSVGSK--------QA---S-TIWQFLLGnDFHRKELAeGlVKAINSTn-A 479  Caenorhabditis el...
Q90184    185 hwkdtwsHRYK--NLLLRn----PNLLMLV--GG---------N----P-SEWALALTsQKTIEPFTrScIDVMRLHk-F 241  Salmonid herpesvi...
Q9Z9M9    339 ----------Q--FKADVRAkqaAGKKVIISVGG----------------EKGTVSVNssASATNFAnSvYSVMREYg-F 389  Streptomyces coel...
Q9FAC9     84 -------TDAE--FKSDISYlksKGKKVVLSIGG----------------QNGVVLLPdnASKQRFInSiQSLIDKYg-F 137  Bacillus cereus
Q9RHU3    115 ----------Q--FKADIAAkqaAGKKVIISVGG----------------QNGTISVNdDASAQAFAdSvYGLMQEYg-F 165  Streptomyces ther...
Q9S5K1    334 -------VESDaeFKAAIKAkqaAGKKVLISIGGQ--------NG-----Q--VQLTSt-AARDKFVsSvSAIIDEYg-L 389  Streptomyces coel...
CBA35206   90 -------HYRH--ITALRKKy--PHVRFLLSVGGDrdvnsegvAD---S-DKYLRLLEqSEHRKSFQaSvLAELNNNg-F 153  fruit fly
1WAW_A    112 DGLDLDWEYPGSQG------SpavDKE---R-FTTLVQ-DLANaF----QQe---AQTsgKERLLLSAAVPAGQTYV--D 171  human
Q9GV28    145 DGIDLAWQFPRVKp-----kK---IRS---T-WGSLWH-GIKKtF----GTtpvdEKEs-EHREGFTALVRELKQAL--I 204  domestic silkworm
Q9W3V1    173 DGIDLDWEFPSAYD------R---ERM---H-LSQLLY-EIRTeW----RRe-------kRTNDILSLAVAAPEGIA--F 225  fruit fly
Q18143    480 DGLEISWTSQ---------------PM-----VSDFDKkNLKSfI----NDiv-aADT----AKMVEIVVATSQQSA--- 527  Caenorhabditis el...
Q90184    242 KGIILDWEPSGNt------aR---DFE---------IE-NFKK-L----GEsfidKMGp-SSEEMLAAAVSTKYPWN--- 293  Salmonid herpesvi...
Q9Z9M9    390 DGVDIDLENG--------------LNP------TYMTQ-ALRAlS----AKa--------GPDMILTMAPQTIDMQS--T 434  Streptomyces coel...
Q9FAC9    138 DGIDIDLES-GIYLngndtnF---KNPttpQ-IVNLIS-AIRTiS----DHy--------GPDFLLSMAPETAYVQGgyS 199  Bacillus cereus
Q9RHU3    166 DGVDIDLENGi-------------------N-ATYMTK-ALRSlS----DKa--------GPSLVITMAPQTIDMQT--P 210  Streptomyces ther...
Q9S5K1    390 DGLDIDFEGHSLSLnaddtdF---KNPktpV-IVNLVS-AVKTlK----AKy--------GDGFVLTMAPETFFVQLgyQ 452  Streptomyces coel...
CBA35206  154 DGIDLAWQFPKNRP------K---LQQ---GvFKRVWG-SLRGwFssssVDe---KSE--EHREQFATLLEELQSDL--R 213  fruit fly
1WAW_A    172 AG-----------------YEv------------------DKIAQNLDFVNLMAYDFHG-SWE--K---------VTGHN 204  human
Q9GV28    205 HK-----------------PKmqlgvtvlpnvnstiyhdvPAIINLVDYVNVGAYDYYT-PTR--Nn-------kEADYT 257  domestic silkworm
Q9W3V1    226 YAyd-----------------------------------iREINLYADYVNLMSYDFHFyRED--Tp--------FTGLN 260  fruit fly
Q18143    528 YS-----------------DFyd----------------yEHLNKTASLIVLHSHRLHS---D--Sl-------pFTGHP 562  Caenorhabditis el...
Q90184    294 MRyd-----------------------------------iAHTHKFFNKIFMKTFGMAS-ISE--VggkkcdtawEIGST 335  Salmonid herpesvi...
Q9Z9M9    435 QG-----------------GYf------------------QTALNVKDILTVVNMQYYN--SG--T---------MLGCD 466  Streptomyces coel...
Q9FAC9    200 AY------------------Gsiwg------------aylPIIYGVKDKLTYIHVQHYN-AGS--G----------IGMD 236  Bacillus cereus
Q9RHU3    211 SA-----------------GYf------------------QTALNIKDILTVVNTQYYN--SG--T---------MLGCD 242  Streptomyces ther...
Q9S5K1    453 YY-----------------GTgkwggqd-----pragaylPVIHALRDDLTLLHVQDYN--SG--S---------IMGLD 497  Streptomyces coel...
CBA35206  214 RGgqlltvsmlphvsaelfIDv------------------PKVLSNVDFVNLGTYDFQT-PERdpK---------VADLP 265  fruit fly
1WAW_A    205 SPLYKRqeeSGAA---ASLNVDAAVQQWLQKG--TPASKLILGMPTYGRSFTLASSSdtr-vgAP---AtG-SGTP---G 271  human
Q9GV28    258 APIYTP---Qnr---npLQNADAAVTYWLtSG--APSQKIVLSXRLRSYLETGXDSEiagvppIH---TdG-PGEA---G 322  domestic silkworm
Q9W3V1    261 APLYAR---SQERslmATFNINYTVQWWLkSG--LEPQRLVVGLPTYGHSFTLVNPLnhr-igAP---AsG-YGK----- 325  fruit fly
Q18143    563 SPLRAT---SSMTn--QKMSWESLLSHWVeKR--VLPSKLVLSLSASTLSMQSLADVr----sSA---AtPfGQSAfvsM 628  Caenorhabditis el...
Q90184    336 WGLDNL---KCQTk-qQYHYLKYAVEFYQ-KA--VPVSKLVFGLVLYANVFEKVQGRf----kDP---EcGy------iI 395  Salmonid herpesvi...
Q9Z9M9    467 GKVYAQ---GTVD----FLTALACIQLe--GG--LAPSQVGLGLPASTR-------------------AaG--------- 507  Streptomyces coel...
Q9FAC9    237 GNNYNQ---G---------TADYEVAM---------ADMLLHGFPVGGN-TNNIFPAlr--sdQV---MiG-LPAA---P 285  Bacillus cereus
Q9RHU3    243 GQVYAQ---GSVD----FLTALACIQLe--NG--LAPSQVGLG--------------------VP---AsP-SAAG---- 283  Streptomyces ther...
Q9S5K1    498 NQYHSM---GG-------------ADFHIAMT-----DMLLTGFPVAG-DANNVFPPlr--pdQV---AiGmPAST---- 546  Streptomyces coel...
CBA35206  266 TPLYAM---YDRD---PSHNVQYQVQYWMNQTteISVHKLHVGVTSYGRAWNMTRNSgit-gyPPipaAnG-AAPP---G 334  fruit fly
1WAW_A    272 PFTKEGGMLAYYEVCSwk-----------gATKQRIQD-QKVPYIFRd------N--QWVGFDDVESFKTKVSYLKQKGL 331  human
Q9GV28    323 PYVKTEGLLSYPEVCGklinpnqqkgmrphLRKVTDPSkRFGTYAFRlpddngeGg-IWVSYEDPDTAGQKAAYVKSKNL 401  domestic silkworm
Q9W3V1    326 --CGQLGFTTLTETCEcvtk-------ffkPNLSYDAE-SCSPYLSAl--------qEWISYENQTSIACKANYVKSLNL 387  fruit fly
Q18143    629 LRSKKGDIHSQQEICEslk--------sgtGVTHWVDG-AEVPYLRR-------Yd-QMVAYENTRSAHIKAVWASMEGV 691  Caenorhabditis el...
Q90184    396 PITCAPGKVGPAVLHDdpe--------hykCKVNSLQQcCQSVFEMDrr-------hYYASWDNVETHKLKIQEVFDN-- 458  Salmonid herpesvi...
Q9Z9M9    508 -----GGYVSPSVVNAald---------clTKAT-----NCGSFKPS-------Kt-----------------YPDLR-- 542  Streptomyces coel...
Q9FAC9    286 AAAPSGGYISPTEMKKal-----------nYIIK------GVPFGGK-------Yk-----------ISNQSGYPAFR-- 328  Bacillus cereus
Q9RHU3    284 -----SGYVSPSVVNDald---------clTQGT-----NCGSFKPS-------Kt-----------------YPDLR-- 318  Streptomyces ther...
Q9S5K1    547 -QAG-NGHVSPAEVTKaln---------clTKKT-----DCGSYATH-------Gt-----------------WPDLR-- 584  Streptomyces coel...
CBA35206  335 RQTVTPGLLSWPEICDllqqqpq-drevphLRKVGDPTkRFGIYAYRaad-dqgEngLWVGYEDPLTAAIKAGFVHAQGL 412  fruit fly
1WAW_A    332 GGAMVWALDLD 342  human
Q9GV28    402 GGVAIVDLSLD 412  domestic silkworm
Q9W3V1    388 GGVMVFSLNTD 398  fruit fly
Q18143    692 GGLALHNMHQD 702  Caenorhabditis elegans
Q90184    459 -----YGISTS 464  Salmonid herpesvirus 2
Q9Z9M9    543 -GAMTWSTNWD 552  Streptomyces coelicolor
Q9FAC9    329 -GLMSWSINWD 338  Bacillus cereus
Q9RHU3    319 -GAMTWSTNWD 328  Streptomyces thermoviolaceus
Q9S5K1    585 -GLMTWSINWD 594  Streptomyces coelicolor
CBA35206  413 GGVAFHDLSMD 423  fruit fly
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