2LSK,2LSG


Conserved Protein Domain Family
Rev1_C

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cd12145: Rev1_C 
Click on image for an interactive view with Cn3D
C-terminal domain of the Y-family polymerase Rev1
Rev1 is a eukaryotic translesion synthesis (TLS) polymerase; TLS is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. The C-terminal domain modeled here is essential for TLS and has been shown to mediate interactions with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7), as well as with the RIRs (Rev1-interacting regions) of polymerases kappa, iota, and eta. Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Statistics
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PSSM-Id: 213388
Aligned: 20 rows
Threshold Bit Score: 98.8836
Created: 6-Sep-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Polymerase eta
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:Polymerase eta interaction site [polypeptide binding site]
Evidence:
  • Structure:2LSK: The C-terminal domain of human Rev1 interacts with the RIR (Rev1-interacting region) of DNA polymerase eta, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ######             ##  #   #    ### ##  ##                                     
2LSK_A          1 GNLAGAVE------FNDVKTLLREWITTIs---DPMEEDILQVVKYCTDLIEEk--DLEKLDLVIKYMKRLMQQs----- 64   human
NP_014991     875 IKFQNLTR------FKKICQLVKQWVAETlgdgGPHEKDVKLFVKYLIKLCDSn--RVHLVLHLSNLISRELNLcaflnq 946  Saccharomyces...
NP_984465     711 VTFQNLIS------QEKIKSLVREWISQTlrsdGPNHKDLDLFTNYLDRLISGgprRLPTLLSMARLISDQLRIheaqg- 783  Ashbya gossyp...
ABY21724      907 VEMPELLM------GDNYKDLLNDWVSREe---VPKPNDVDLILKQVSRMIKNd--QLDHVCDVMKYWCRIINMkr---- 971  fruit fly
XP_002413345  804 PSLSVISSkd---kMEKVKMLLQEWICSRd--gEISNTDVDAWTQLLGGVVQEr--NLEKLDLLLKFFYRTVQRs----- 871  black-legged ...
EFN73756     1036 VNHLFALP------LQQVKMQIQTWITKSk---VVNEVDFLSLATFLSMLPQKk--RIEDLHILLKTMHRCITKn----- 1099 Camponotus fl...
EFR29973      276 PKDSNIFR------RDNWRELVEEWIDSAe---EPYEYDVELLAANGEELVENr-aLLERLYLIMRCIYRLVQQr----- 340  Anopheles dar...
EFX74425      929 LGLSGATS------LPEIRQLLIEWFSSTd---VPENEDCEAVSSFLASLVNNk--ELHKIEPIILFLKRRGSDi----- 992  common water ...
EFY88713     1038 FASSGVTS------TREVKDMLDAWHTQTqh-dGPHSDDVEVFGKYLQKVVKEe-rDLEKVVILIKWLHVLVEQdgsp-- 1107 Metarhizium a...
XP_003387325  705 PSLSSLSNgnperfLNETRTHIKAWVALYp--aGPKERDSTIFIQFLISLIDLn--ALEIVSLSLKCFHRVVQSi----- 775  Amphimedon qu...
Feature 1                                            
2LSK_A         65 ---vESVWNMAFDFILDNVQVVLQQTY--GSTLKV 94   human
NP_014991     947 dhsgFQTWERILLNDIIPLLNRNKHTYqtVRKLDM 981  Saccharomyces cerevisiae S288c
NP_984465     784 drpsFQEWEEYLVRVVLVRLNRCKQLY--TQNVEI 816  Ashbya gossypii ATCC 10895
ABY21724      972 --ssSCCWHVAYKHIEESIQNQMLTIE--GYSLLF 1002 fruit fly
XP_002413345  872 ---gSKKWEDTYMKVINVVQTEVLQAF--GHFMKL 901  black-legged tick
EFN73756     1100 ---dDCTWHKTYRRTVKHVQRYMQIEY--NNNLMV 1129 Camponotus floridanus
EFR29973      341 ---gTCPWHRAYRAIERTVQTRMMVIY--GSRLGI 370  Anopheles darlingi
EFX74425      993 ----NDSWKRAIEDIINNTQLYVIQHY--NAPLKL 1021 common water flea
EFY88713     1108 -gkgQESWREAVKQVESAVQAAVKERG--LGPLDI 1139 Metarhizium acridum CQMa 102
XP_003387325  776 ---tNEKWREAYARVVAVIQDEVLMRY--NGHLSI 805  Amphimedon queenslandica

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