2FRY,3QWX


Conserved Protein Domain Family
SH3_Nck_3

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cd11767: SH3_Nck_3 
Click on image for an interactive view with Cn3D
Third Src Homology 3 domain of Nck adaptor proteins
This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase.
Statistics
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PSSM-Id: 212701
Aligned: 13 rows
Threshold Bit Score: 93.53
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif.
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  #   #                   ##             # ##   
2FRY_A         4 VVQTLYPFSSVteEELNFEKGETMEVIEKpendPEWWKCKNArGQVGLVPKNYVVV 59  human
3QWX_X       120 VVVGTFKFTGEreTDLPFEQGERLEILSKt--nQDWWEARNAlGTTGLVPANYVQI 173 nematode
7511162      215 VVVALYSFDASssEELSFKKGERLEIVDHpehdPDWWMARNAsGTTGLVPRNYIEV 270 Caenorhabditis elegans
7296156      328 IVVALYSFTSNndQELSFEKGDRLEIVDRpasdPDWYKARNNqGQVGLVPRNYLQE 383 fruit fly
CBY08410     167 NVRCLYPFAGQndSELPFQENEELDILGKpaddPEWWVARNQnGQIGLVPRIYTEV 222 Oikopleura dioica
XP_002737986 202 AVEALYTFQARndEELRFEAGEHLDIIGMpdndPEWWQARNAkGEDGLIPKNYVQV 257 Saccoglossus kowalevskii
XP_002160090 184 KVRTLYPFKSQskEELSFDKDIILEIIDKpkddPDWWRARKSnGEIGLVPRNYVEE 239 green hydra
XP_002132091 211 VVRTLYAFNSGnpEELAFEQDEMLDIIEQppddPEWWLARNSeGLTGLVPMNYVEV 266 Ciona intestinalis
XP_784072    191 GVTTLYAFKGRtdEELNFDASELLDIISNpsddQDWWKARNKlGTVGLVPSNYVKV 246 purple urchin
XP_001730494 121 EAVALYTFQGGqpGDLSFVQGERISLLEKv--sDDWFRARNAeGHIGIVPTNYIER 174 Malassezia globosa CBS 7966
ADY44585     121 KMIALYSFEGEqsTDLPFEKNELLEVIGKp--qEGWWQARNAlGNTGLVPTNYLAR 174 pig roundworm
GAA50029     383 RVLTLYPFTRNqnEELSFDTNEVLEIIEKppddPDWWRCRNArGETGLVPRNYVSL 438 Clonorchis sinensis
127962       194 VVQALYPFSSSndEELNFEKGDVMDVIEKpendPEWWKCRKInGMVGLVPKNYVTV 249 human

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