2JS0,2FRW


Conserved Protein Domain Family
SH3_Nck_2

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cd11766: SH3_Nck_2 
Click on image for an interactive view with Cn3D
Second Src Homology 3 domain of Nck adaptor proteins
Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212700
Aligned: 17 rows
Threshold Bit Score: 94.2543
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif.
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                 ##                 # ##   
2JS0_A          6 PAYVKFNYMAEReDELSLIKGTKVIVMEKcsDGWWRGSYNg-----QVGWFPSNYVTE 58   human
ADY45383      133 TAAAKYSYEPQReDELRLCKGDVVTVLEKssDGWWKGQCHg-----ETGWFPSNYIDE 185  pig roundworm
XP_001748498  980 LFVARFDYEPRFeDELALRSGLPVQVLESpdGGWWRGECQg-----QTGWFPSNYVER 1032 Monosiga brevicollis MX1
7511162       118 KAVVKFTYEPRLeDELGLTKGDFVYVVEKstDGWWKGEAPn----gGVGWFPSNYVEE 171  Caenorhabditis elegans
CBY08410       79 RVVAKYNYEKQRdDELELVKGNRVVVLEEseDKWWRGRNLet---gEDGWFPSNYVTD 133  Oikopleura dioica
XP_002415019  103 TALVRYNYEAKQaDEISLAKGTRVLVMEKssDGWWKGEHCg-----NVGWFPSNYVQV 155  black-legged tick
XP_002572960  244 ICQARFNYPACQpDELSIERGDKIRVLEKssDGWWRGILItegkpqRMGWFPSNYVTL 301  Schistosoma mansoni
EFX75502      130 WALVRYNYVAQQtDELSLVKGTKVLVLEKssDGWWKGQYQn-----QIGWFPSNYTLP 182  common water flea
XP_003389729  107 PAIAKFRYVSTReDELSLEKGDKVVILEKeaDGWWRGRKDn-----HIGWFPFNYVEE 159  Amphimedon queenslandica
EHJ63238      144 TAVVKYNYQAQQpDELALTKGTRILILEKsnDGWWRGQYQg-----HTGWFPSNYTSE 196  monarch butterfly

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