1NRJ


Conserved Protein Domain Family
SRPRB

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pfam09439: SRPRB (this model, PSSM-Id:204242 is obsolete and has been replaced by 430611)
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Signal recognition particle receptor beta subunit
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Statistics
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PSSM-Id: 204242
Aligned: 8 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 22-Dec-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1NRJ_B  10 SYQPSIIIAGPQNSGKTSLLTLLTTD-----SVRPTVVSQ-EPLSAADY------DGSGVTLVDFPGHVKLRYKLSDYLK 77  baker's yeast
Q22013  36 SNKNRVLFVGLMDCGKTTIFTQLSQKeaeypTTTKTYTSMvENKITLRI------KDKEKEIIDYPGNDRLRQKLIENHL 109 Caenorhabditis elegans
Q6DGW3  58 KVRNAVLLLGLCDSGKTLLFTRLLLG-----KFVRTQTSItESSATYKSks---eRGNSWTLIDVPGHESLRTQIVEK-- 127 zebrafish
Q9Y5M8  62 SSQRAVLLVGLCDSGKTLLFVRLLTG-----LYRDTQTSItDSCAVYRVnn---nRGNSLTLIDLPGHESLRLQFLER-- 131 human
Q6P860  40 TSRRAVLLIGVCDSGKTLLFNRLLTG-----TYKKTQTSItANCAAYKVkn---dKGSSLTLVDLPGHESLRLQFLEQ-- 109 western clawed frog
Q75C54  42 TSSPIFIIAGPSGSGKTSLFNLLTTG-----EAGKTVASQ-IASFSDSFmlpsgvEKFKFALIDFPGHVKLRQELFTTLK 115 Eremothecium gossypii
Q6FUX9  42 KKVPTIIIAGPSYSGKTSLFHKLTSDet--nAKLLTVMSQ-EPSFALKY------KGTMTTLADYPGHVKLAYKLKNGII 112 Candida glabrata
Q6CNK9  39 NRAPTFIIAGLPQTGKTALFNLLTTD-----SVKPSVMSQ-EPNVAEDYmlptshKNFKFKLIDFPGHDKFRSELLQTIK 112 Kluyveromyces lactis
Q22013  36 SNKNRVLFVGLMDCGKTTIFTQLSQKeaeypTTTKTYTSMvENKITLRI------KDKEKEIIDYPGNDRLRQKLIENHL 109 Caenorhabditis elegans
Q6DGW3  58 KVRNAVLLLGLCDSGKTLLFTRLLLG-----KFVRTQTSItESSATYKSks---eRGNSWTLIDVPGHESLRTQIVEK-- 127 zebrafish
Q9Y5M8  62 SSQRAVLLVGLCDSGKTLLFVRLLTG-----LYRDTQTSItDSCAVYRVnn---nRGNSLTLIDLPGHESLRLQFLER-- 131 human
Q6P860  40 TSRRAVLLIGVCDSGKTLLFNRLLTG-----TYKKTQTSItANCAAYKVkn---dKGSSLTLVDLPGHESLRLQFLEQ-- 109 western clawed frog
Q75C54  42 TSSPIFIIAGPSGSGKTSLFNLLTTG-----EAGKTVASQ-IASFSDSFmlpsgvEKFKFALIDFPGHVKLRQELFTTLK 115 Eremothecium gossypii
Q6FUX9  42 KKVPTIIIAGPSYSGKTSLFHKLTSDet--nAKLLTVMSQ-EPSFALKY------KGTMTTLADYPGHVKLAYKLKNGII 112 Candida glabrata
Q6CNK9  39 NRAPTFIIAGLPQTGKTALFNLLTTD-----SVKPSVMSQ-EPNVAEDYmlptshKNFKFKLIDFPGHDKFRSELLQTIK 112 Kluyveromyces lactis
1NRJ_B  78 TRAKfVKGLIFMVDSTVDPKKLTTTAEFLVDILSITEssceNGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK 157 baker's yeast
Q22013 110 HSRS-LLRIVFVVDSAAFSKNARDVAELFYTVALENV----DKVPILIACHKQDLSLAKTEKVIRNSLEKEIGLINKSRA 184 Caenorhabditis elegans
Q6DGW3 128 YKDV-ARAIVFVVDSSIFQKDVRDVAEFLYSILTDSIla-kNAPTLVVACNKQDITMAKSAKLIQQQLEKELNTLRLTRS 205 zebrafish
Q9Y5M8 132 FKSS-ARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMgl-kNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS 209 human
Q6P860 110 YKAS-ARALLFVVDSSAFQREVKEVAELFYQLLTDVAil-kNVPPILIACNKQDISMAKSAKLIQQQLEKELNTLRVTRS 187 western clawed frog
Q75C54 116 ASSN-IRGLIFMVDSTVDPKRVTETAEFLYDVLSITErk-pQAIDIMIACNKSESFTSRPPTMIKDALEKELGQIIERKS 193 Eremothecium gossypii
Q6FUX9 113 DLKGnLKGILFVLDSTIDPKNITETAEYLTEILLILEki-rEPIDILIACNKNESFTARQPLKIKEALENEITRIFERKK 191 Candida glabrata
Q6CNK9 113 DSSQ-LKGLIYVIDSTINPKELVSTAELLYEILSVTElr-pDGVDILLACNKSESFVARPPSKIKGALEKEITEIMKRKA 190 Kluyveromyces lactis
Q22013 110 HSRS-LLRIVFVVDSAAFSKNARDVAELFYTVALENV----DKVPILIACHKQDLSLAKTEKVIRNSLEKEIGLINKSRA 184 Caenorhabditis elegans
Q6DGW3 128 YKDV-ARAIVFVVDSSIFQKDVRDVAEFLYSILTDSIla-kNAPTLVVACNKQDITMAKSAKLIQQQLEKELNTLRLTRS 205 zebrafish
Q9Y5M8 132 FKSS-ARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMgl-kNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS 209 human
Q6P860 110 YKAS-ARALLFVVDSSAFQREVKEVAELFYQLLTDVAil-kNVPPILIACNKQDISMAKSAKLIQQQLEKELNTLRVTRS 187 western clawed frog
Q75C54 116 ASSN-IRGLIFMVDSTVDPKRVTETAEFLYDVLSITErk-pQAIDIMIACNKSESFTSRPPTMIKDALEKELGQIIERKS 193 Eremothecium gossypii
Q6FUX9 113 DLKGnLKGILFVLDSTIDPKNITETAEYLTEILLILEki-rEPIDILIACNKNESFTARQPLKIKEALENEITRIFERKK 191 Candida glabrata
Q6CNK9 113 DSSQ-LKGLIYVIDSTINPKELVSTAELLYEILSVTElr-pDGVDILLACNKSESFVARPPSKIKGALEKEITEIMKRKA 190 Kluyveromyces lactis
1NRJ_B 158 KSLNEVerkineedyaENTLD----VLQSTDGFKFANLEAS-V 195 baker's yeast
Q22013 185 AALIGT----------DGSEEkrstLTDTGIDFKWEDLKKQeV 217 Caenorhabditis elegans
Q6DGW3 206 AALSSQ----------DGAVGgsvyLGKKGKDFEFSQLANR-V 237 zebrafish
Q9Y5M8 210 AAPSTL----------DSSSTapaqLGKKGKEFEFSQLPLK-V 241 human
Q6P860 188 AAPSIL----------ESGNSgvtqLGKKGKDFDFTQLPMK-V 219 western clawed frog
Q75C54 194 KDLKGA-----------GEDDlttvFATSGSAFKLDHLEAA-V 224 Eremothecium gossypii
Q6FUX9 192 KSLGNIerdigdvdeiNENLDlsfdI---SKGFKFDYLEGN-V 230 Candida glabrata
Q6CNK9 191 KSLKANskkslsddanDDDDDevavLQQNSAGFEFDRIDGN-V 232 Kluyveromyces lactis
Q22013 185 AALIGT----------DGSEEkrstLTDTGIDFKWEDLKKQeV 217 Caenorhabditis elegans
Q6DGW3 206 AALSSQ----------DGAVGgsvyLGKKGKDFEFSQLANR-V 237 zebrafish
Q9Y5M8 210 AAPSTL----------DSSSTapaqLGKKGKEFEFSQLPLK-V 241 human
Q6P860 188 AAPSIL----------ESGNSgvtqLGKKGKDFDFTQLPMK-V 219 western clawed frog
Q75C54 194 KDLKGA-----------GEDDlttvFATSGSAFKLDHLEAA-V 224 Eremothecium gossypii
Q6FUX9 192 KSLGNIerdigdvdeiNENLDlsfdI---SKGFKFDYLEGN-V 230 Candida glabrata
Q6CNK9 191 KSLKANskkslsddanDDDDDevavLQQNSAGFEFDRIDGN-V 232 Kluyveromyces lactis
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