2DB3,3EAQ,2QEQ,1D2M,3I5X,3FHO,2KBF


Conserved Protein Domain Family
HELICc

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smart00490: HELICc 
Click on image for an interactive view with Cn3D
helicase superfamily c-terminal domain
Statistics
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PSSM-Id: 197757
View PSSM: smart00490
Aligned: 558 rows
Threshold Bit Score: 37.1913
Threshold Setting Gi: 74578959
Created: 13-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DB3_A        314 DFLASFLSEK---EFPTTSIHGDRLQSQREQALRDFKNGSM------KVLIATSVASRGLDIKNIKHVINYDMPSKIDDY 384
gi 82059166   584 DEHTHSDHQFi--PVRFTILHSEIEPAVRERSLALFNASSNleghqlRILIGSKVIVEGLNFQAVRYEMIMSLPLDIPRL 661
gi 82059328   451 PTHTLVLSSK---ITRFTLITGKILSKERDMIQQLWNSPLNihgeviKILLVSKTGAEGLDLKYGRQVHILEPYWDKARE 527
gi 6707722    397 EILLQYFNVF---GITYIEFSS-RTKDIRSKSVSDFNKVDNtdgeitKVCVFSQSGNEGISFLSINDIFILDMTWNEASL 472
gi 6707724    404 STLKIYFNIF---NISYVEYSS-KTESTRDYNIDIFNKYDNlygnkiKVCIFSAAGSEGISFSSINDIIILDLPWKESDI 479
gi 6707719    394 RIFVKYLEVF---GISYIEFSS-RTKDTRTRAVAEFNRVENtngeliKTCVFSLSGNEGISFLSINDIFILDMTWNEASL 469
gi 13626618   376 KTIGGRLKTF---AIVTSKMKS--SLEELLAVYNSPANNDGsr---iMFLFSSNIMSESYTLKEVMHIWFMTIPDTFSQY 447
gi 62288378   421 EILLLYFKVF---GISNIEFSS-RTKDTRIKAVAEFNQESNtngeciKTCVFSSSGGEGISFFSINDIFILDMTWNEASL 496
gi 9964506    405 SSLKCYFNCF---NISYIEYSS-KTLKTRDNELNEYNNYENnngkkvKVCIFSYAGSEGISFKCINDIIILDMPWNESEL 480
gi 163937701  309 SIGYKKWNSNkkqKRTYAVIDGRTNKKNVEEILTSFNSIANikgdniHILLGSSVLSESITLYRVKHLHIISPFWNYGQI 388
                          90
                  ....*....|.
2DB3_A        385 VHRIGRTGRVG 395
gi 82059166   662 IQVFGRVVRKN 672
gi 82059328   528 DQVKARIIRIG 538
gi 6707722    473 KQIIGRAIRLN 483
gi 6707724    480 KQIIGRSIRLN 490
gi 6707719    470 KQIIGRAIRLH 480
gi 13626618   448 NQILGRSIRKF 458
gi 62288378   497 RQIVGRAIRLN 507
gi 9964506    481 KQIIGRSIRLN 491
gi 163937701  389 KQSIGRAIRIG 399
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