Conserved Protein Domain Family
AT_hook

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smart00384: AT_hook 
DNA binding domain with preference for A/T rich regions
Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Statistics
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PSSM-Id: 197691
View PSSM: smart00384
Aligned: 49 rows
Threshold Bit Score: 30.2895
Threshold Setting Gi: 2894604
Created: 13-Jul-2011
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

smart00384 is not assigned to any domain superfamily.
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10
                  ....*....|...
gi 1346791    263 KRSRGRPRKVQNS 275
gi 195499337   92 TKGRGRPKSSGGA 104
gi 2183083    291 TGKRGRPRNTEKA 303
gi 9828616    731 RKKRGRPKKFDRI 743
gi 193208706  138 QKRRGRPRKTDAA 150
gi 259145599    6 AKKRGRPRKSVVA 18
gi 14591343    84 EKGRGRPKKYSTR 96
gi 84999736   363 lKKRGRPRKTIA- 374
gi 2894604    131 KKKRGRPRKYAAD 143
gi 212645800   54 KKPRGRPKKYEDS 66
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