2I3S,1NR0,3RFH,3F3F,1PI6,3EWE,2HES,3IZB,3JRO,3JRO,3IZA,3IZA,3FM0,1VYH,2CNX,3IZ6,2HES,3C99


Conserved Protein Domain Family
WD40

?
smart00320: WD40 
Click on image for an interactive view with Cn3D
WD40 repeats
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Statistics
?
PSSM-Id: 197651
View PSSM: smart00320
Aligned: 1783 rows
Threshold Bit Score: 26.8914
Threshold Setting Gi: 3309655
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
2I3S_A          1 MQIVQIEQA----PKDYISDIKIIPSK----SLLLITSWDGSLTVYK 39
gi 74963780    93 DSEPIMFSGh---KKAVNCIEFSSDGL----LFATGGKDGVIVLWDI 132
gi 74676037   221 EGYPVTSLKk---HTAPVSCLALHGSE----KKVLSGSWDKMVYYWD 260
gi 291395444  210 DNQPLHIFDk--lHTSPLTQIRLNPVY----KAVVSSDKSGMIEYWT 250
gi 19075269   168 DGEVLYTVKk---HTAPVHCLRYLSTL----DCFLSIDIGGMVEYWS 207
gi 115933255  432 FQSTAKTGK----HTDPVWQVAWQKDDldnnLNFFSVSSDGRVVAWT 474
gi 297287428  177 DNLIYYALGg---HKDAIVACFFESNS----LDLYSLSQDGVLCMWQ 216
gi 323336599  299 EGSIAHYFKgrngHTQIVNILRLNGQE----DRFLSGSWDKRLLEWD 341
gi 17537825   355 DPEPMFTIDe---HTGQVRTAQFCSFRdg-iLATGGGINDGTVKLWD 397
gi 207347269  180 KNLAATTFNg---HRDYVMGAFFSHDQ----EKIYTVSKDGAVFVWE 219
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap