1II5,2RCA,2V3U,3R7X,1PB8


Conserved Protein Domain Family
PBPe

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smart00079: PBPe 
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Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
Prokaryotic homologues are represented by a separate alignment: PBPb
Statistics
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PSSM-Id: 197504
View PSSM: smart00079
Aligned: 32 rows
Threshold Bit Score: 86.1893
Threshold Setting Gi: 15988294
Created: 13-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1II5_A       103 TatplFRSVGDLKN-----KEVAVVRDTTa-VDWANFYQ----------------ADV-----------------RETNN 143
gi 3080421   675 Ey---TRSCCSAHL------AICGTNHNIklHSESYIDSysat--------akltNQRsrhthqqqwtswvsgrlVPLGS 737
gi 3482941   659 T----VTNWKDLIKf----NKNIGYQRGT--FVRELLKSqgfde-------sqlkPFG-----------------SAVEC 704
gi 15236044  662 Tet-sIKNVLAK-------GGPVAYQRDS--FVLGKLREsgfpe-------srlvPFT-----------------SPEKC 707
gi 18402960  673 A----ITGIDSLRAs----EVPIGYQAGT--FTLEYLTYslgma------rsrlvPLD-----------------STEEY 719
gi 15227034  661 T----VTNVNDLIK-----NRDCVGYQGG--A---FVKDil-------------lGLGfhedq-------lkpfdSAKDA 706
gi 25411789  706 P----IKGVDTLISs----TGRIGFQVGS--FAENYMTDelnia------ssrlvPLA---------------------S 748
gi 334184632 646 R----IEGMDTLIAs----NEPIGVQDGT--FAWKFLVNelnia------psriiPLK-----------------DEEEY 692
2V3U_A       116 S----IQSLQDLSKq---tDIPYGTVLDS--AVYQHVRMkglnpferdsmysqmwRMInr-------------snGSENN 173
1PB8_A       155 R----ITGINDPRLrnpsdKFIYATVKQS--SVDIYFRRqvel--------stmyRHM------------------EKHN 202
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1II5_A       144 LTAAITLLQK-KQVE---AVMFDRPALIYYTRQnpNLN---LEVTEI-RVSLEPYGFVLKENS----------------- 198
gi 3080421   738 PKEYAAALQN-GTVA---AIVDERPYVDLFLSE--FCG---FAIRGQ-EFTRSGWGFAFPRDS----------------- 790
gi 3482941   705 DELFSNGT---ITAS-----FDEVAYIKVILSQ--NSS---KYTMVEpSFKTAGFGFVFPKKS----------------- 754
gi 15236044  708 EELLNKGPSK-GGVS---AAFMEVPYVRVFLGQ--YCKkykMVEVP---FDVDGFGFVFPIGS----------------- 761
gi 18402960  720 EKALKLGPTNwGGVA---AIVDELPYIELFLAE--RTG---FKIVGE-PFMHRGWGFAFKRDS----------------- 773
gi 15227034  707 DDLLSKGKSK-GIAA----AFDEVAYLKAILSQ--SCSk--YVMVEP-TFKTGGFGFAFPKNS----------------- 759
gi 25411789  749 PEEYANALQN-GTVA---AIVDERPYIDLFLSD--YCK---FAIRGQ-EFTRCGWGFVSHPSSeyllslpaclniilitf 818
gi 334184632 693 LSALQRGPRG-GGVA---AIVDELPYIKALLSNs-NCK---FRTVGQ-EFTRTGWGFAFQRDS----------------- 746
2V3U_A       174 VLESQAGIQK-VKYGn-yAFVWDAAVLEYVAINdpDCS---FYTVGN-TVADRGYGIALQHGS----------------- 230
1PB8_A       203 YESAAEAIQA-VRDNklhAFIWDSAVLEFEASQ--KCD---LVTTGE-LFFRSGFGIGMRKDS----------------- 258
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
1II5_A       199 -------------PLQKTINVEMLNLLYSRVIAEFTERWLGP 227
gi 3080421   791 -------------PLAIDMSTAILGLSETGQLQKIHDKWLSR 819
gi 3482941   755 -------------PLTDDVSRAILNVTQGEEMQHIENKWFKK 783
gi 15236044  762 -------------PLVADVSRAILKVAESNKATQLETAWFKN 790
gi 18402960  774 -------------PLAIDMSTAILKLSETRKLQEIRKKWLCK 802
gi 15227034  760 -------------PLTGEFSRAILNLTQNNVTQQIEDRWFPK 788
gi 25411789  819 lhflfkkafprdsPLAVDMSTAILGLSETGELQKIHDRWLSK 860
gi 334184632 747 -------------PLAVDMSTAILQLAEEGKLEKIRKKWLTY 775
2V3U_A       231 -------------PYRDVFSQRILELQQSGDMDILKHKWWPK 259
1PB8_A       259 -------------PWKQNVSLSILKSHENGFMEDLDKTWVRY 287
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