2Q0O,2AVX,3IX8,3QP6


Conserved Protein Domain Family
Autoind_bind

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pfam03472: Autoind_bind (this model, PSSM-Id:190651 is obsolete and has been replaced by 335344)
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Autoinducer binding domain
This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.
Statistics
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PSSM-Id: 190651
View PSSM: pfam03472
Aligned: 189 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 5-Apr-2011
Updated: 12-Apr-2011
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2Q0O_A        19 DGHMIKIALRSFAHSCGYDRFAYL---------QKDGTQVRTFH-SYPGPWESIYLGSDYFNIDPVLAEAKRRRDVFFWT 88
gi 123082479  26 TLGDLHGTIDAAVRDLGFRWFTLLhni----dlRRGDEQSLFLT-TYPSAWLEEVLEERHYLEDPIHAACARTPSGLAWD 100
gi 123385483  24 SREELAALMTCLASEIGFRHFALIhhd----plAGERPDRVDIR-DYPAAIVDRLFDQGQLRRDPVIRGCLFSDGAFLWS 98
gi 123753047  21 DSADLTTLLTGTFARLGFPHSCYHvvr----leGAGARLPYVLH-NYKDSWSEHYFREGFLEIDPVLATCPDRQLPFLWS 95
gi 82322878   17 TVNSCLDRVFRDVCALGFQSLVYDyapvplsmeGALITPTVFMQrNAPGDMQHVWCEHGYYQHDPVQQRATRRNTPFVWS 96
gi 123767011   7 GFDAHLDAACRQAMALGFAAVLYDyspvprahdGTLITPTILETrNLPVDMAEIWCKQGYYQIDPVQDAALLVSAPFVWS 86
gi 81854207   17 TLDGRIDQVFEAMKSIGFEALIYDytpvprdldGTIMVPSLLKLrNISEDMHDYWFDRGYFRIDPVQQVALRTSTPFFWN 96
gi 81307925   17 TLDQQMDCALLLASDLGFDAVIYDyspvpvshdGALITPSLLSLrNTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWS 96
gi 148553102  27 SSAQLSEVIAGAIQQFGFRWFALVddg----dlYKHRSGCMMLT-NYPSSWVDEVISARLYRDDPVHAASIRSPTGLCWD 101
gi 148550964  62 TLDQVKSLLDAIVRQFGFRWFALVhnv----dlKRTTCKALLIT-TYPVRWIEEIMESRLYLEDPVHAACVKTVSGLSWD 136
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2Q0O_A        89 Adawp-----argSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFaSPERKVDISGVLDpKKAVQLLMMVHYQLKI 163
gi 123082479 101 Rvgdv-----lelTPRQRGILDRARDHDLASGYSLPIRTPGEPEAIFTAaRSRDEPLSAE----EVLTARLLGSVAYDRA 171
gi 123385483  99 Dldki-----itfTRQDRHSLEFGAGHGLNEGITVPHVLLGECIGSCTFaGATDPQLASR----YLGFAQITGIFAFQAA 169
gi 123753047  96 Eaiap-----eslSHDQRRMFSDARDAGLHDGYSVPIRGSHGEFATVTViPEQGGDAARRLIGeQKHLVHLLALYFDRHA 170
gi 82322878   97 YrtdgdcagveyvGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSAaIDAVAAEALRLAEsQLLPFLLLAHAFQARA 176
gi 123767011  87 HegdqsdvmarvlRAEHRPVLDYLRHRGLTRGVTVPIRCGEGALATFTAiAPSGAPFPPED---RLSSLGLLGQSFHDRV 163
gi 81854207   97 YdpdadtlirrfmSDDTAPVARYLSERDMSTGVTVPVHMPRGDYATVTGvRFGGNRAFEGHALrYIADFNLLAHVFHEAA 176
gi 81307925   97 YlpraetvlktfiTDMHKPVVRYLHDSHMTCGVTVPIHMPKGGFATLTGlCTDGSDVALEDARqSLAEFGLLAHAFQEVA 176
gi 148553102 102 Ripdv-----iapTRAQLSVLERGRAHGLTTGYTVPFRIPGERGAFFSIaRPKDRSFTYSEAI-SAQLLGGIAFEAGRAL 175
gi 148550964 137 Qigdy-----iapNARQLSILERGRAHGLASGFTMPIRMRDEPDAMFTVaRQGDETISSPDLL-CARLIGTVAFdqartl 210
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