2LLI,2IHX,2LLI,2LLI,2IHX


Conserved Protein Domain Family
zf-CCHC

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pfam00098: zf-CCHC (this model, PSSM-Id:189387 is obsolete and has been replaced by 395050)
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Zinc knuckle
The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.
Statistics
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PSSM-Id: 189387
Aligned: 184 rows
Threshold Bit Score: 25.8777
Threshold Setting Gi: 159164659
Created: 28-Mar-2013
Updated: 4-Apr-2013
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LLI_A  106 IYCYNCGGKGHFGDDCKE 123  Saccharomyces cerevisiae S288c
P91223  254 GVCFKCGSMEHSIHECKK 271  Caenorhabditis elegans
P91599  162 KVCYTCGSEEHVSSICPE 179  Caenorhabditis remanei
Q6ZN17  149 KKCHYCQSIMHMVANCPH 166  human
Q94885  377 GSCYACGQLGHLVAQCPT 394  fruit fly
O24586  363 RSCFKCGKIGHFIANCPD 380  Zea mays
P05894  412 QGCWKCGKMDHVMAKCPN 429  Simian immunodeficiency virus (MM142-83 ISOLATE)
P89153  413 QGCWGCGKTGHVMAKCPE 430  Simian immunodeficiency virus
O01418  616 LQCYRCHALGHVSARCPS 633  domestic silkworm
2IHX_A    5 GLCYTCGSPGHYQAQCPK 22   Rous sarcoma virus
P91223  254 GVCFKCGSMEHSIHECKK 271  Caenorhabditis elegans
P91599  162 KVCYTCGSEEHVSSICPE 179  Caenorhabditis remanei
Q6ZN17  149 KKCHYCQSIMHMVANCPH 166  human
Q94885  377 GSCYACGQLGHLVAQCPT 394  fruit fly
O24586  363 RSCFKCGKIGHFIANCPD 380  Zea mays
P05894  412 QGCWKCGKMDHVMAKCPN 429  Simian immunodeficiency virus (MM142-83 ISOLATE)
P89153  413 QGCWGCGKTGHVMAKCPE 430  Simian immunodeficiency virus
O01418  616 LQCYRCHALGHVSARCPS 633  domestic silkworm
2IHX_A    5 GLCYTCGSPGHYQAQCPK 22   Rous sarcoma virus
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