Conserved Protein Domain Family
LGIC_ECD_GABAAR_B2

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cd19041: LGIC_ECD_GABAAR_B2 
extracellular domain of gamma-aminobutyric acid receptor subunit beta-2 (GABAAR-B2 or GABRB2)
This family contains extracellular domain (ECD) of gamma-aminobutyric acid receptor beta-2 subunit, a protein that is encoded by the GABRB2 gene. GABAAR is an anionic channel, mediating fast inhibitory synaptic transmission. Upon gamma-aminobutyric acid (GABA) binding to the ligand binding site on the ECD, Cl- ions are selectively conducted through the GABAAR pore, resulting in hyperpolarization of the neuron. GABAAR is the principal mediator of rapid inhibitory synaptic transmission in the human brain. A decline in GABAAR signaling triggers hyperactive neurological disorders such as insomnia, anxiety, and epilepsy. The beta-2 subunit forms heteropentamers with other GABAAR subunits, with alpha1-beta2-gamma2 subtype being the most prevalent isoform (approximately 50%-60% of all GABAARs), and are expressed in almost all regions of the brain. It also assembles less abundantly as alpha4beta2/3delta and alpha6beta2/3delta. Mutations or genetic variations of the genes encoding the GABRB2 and GABRB3 have been associated with human epilepsy, both with and without febrile seizures. Mutations in GABRB2, and GABRB3 have been associated with infantile spasms and Lennox-Gastaut syndrome. A de novo missense mutation of GABRB2 causes early myoclonic encephalopathy, a disease with a devastating prognosis, characterized by neonatal onset of seizures. Another de novo heterozygous missense variant in exon 4 of GABRB2 is associated with intellectual disability and epilepsy. GABRB2 plays important tumorigenic functions and acts as a novel oncogene in papillary thyroid carcinoma (PTC).
Statistics
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PSSM-Id: 349842
Aligned: 7 rows
Threshold Bit Score: 357.809
Created: 3-Nov-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ligand bindingCys-looppentamer
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of type-A gamma-aminobutyric acid receptor (GABAAR) family beta subunits

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1               #                  #                                                     
NP_068711     60 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY.[2].IPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVK 136 human
NP_001161800  60 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY.[2].IPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVK 136 Rhesus monkey
XP_003434557  60 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY.[2].IPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVK 136 dog
NP_001264625  60 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY.[2].IPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVK 136 chicken
NP_001019558  59 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY.[2].IPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVK 135 zebrafish
AAI42873      62 VGVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY.[2].IPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVK 138 zebrafish
NP_001096421  60 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY.[2].IPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVK 136 tropical clawed frog

Feature 1                                                                                        
NP_068711    137 NRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVT.[1].IELPQFSI 212 human
NP_001161800 137 NRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVT.[1].IELPQFSI 212 Rhesus monkey
XP_003434557 137 NRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVT.[1].IELPQFSI 212 dog
NP_001264625 137 NRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDNAVTGVT.[1].IELPQFSI 212 chicken
NP_001019558 136 NRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDGAVSGVE.[1].IELPQFSI 211 zebrafish
AAI42873     139 NRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGNHAVTGVE.[1].IELPQFSI 214 zebrafish
NP_001096421 137 NRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIGFYWRGGNNAVTGVE.[1].LELPQFSI 212 tropical clawed frog

Feature 1                                     
NP_068711    213 VDYKLITKKVVFSTGSYPRLSLSFKLKRN 241 human
NP_001161800 213 VDYKLITKKVVFSTGSYPRLSLSFKLKRN 241 Rhesus monkey
XP_003434557 213 VDYKLITKKVVFSTGSYPRLSLSFKLKRN 241 dog
NP_001264625 213 VDYKLITKNVVFSTGAYPRLSLSFKLKRN 241 chicken
NP_001019558 212 VDYKLISKNVVFSTGSYPRLSLSFKLKRN 240 zebrafish
AAI42873     215 VDYKLISKNVVFSTGSYPRLSLSFKLKRN 243 zebrafish
NP_001096421 213 IDYNLLSRNVVFSTGSYPRLSLSFKLRRN 241 tropical clawed frog

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