1WHW


Conserved Protein Domain Family
RRM3_RBM19

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cd12567: RRM3_RBM19 
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RNA recognition motif 3 (RRM3) found in RNA-binding protein 19 (RBM19) and similar proteins
This subgroup corresponds to the RRM3 of RBM19, also termed RNA-binding domain-1 (RBD-1), which is a nucleolar protein conserved in eukaryotes. It is involved in ribosome biogenesis by processing rRNA. In addition, it is essential for preimplantation development. RBM19 has a unique domain organization containing 6 conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains).
Statistics
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PSSM-Id: 409983
Aligned: 11 rows
Threshold Bit Score: 159.095
Created: 22-Sep-2011
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

1WHW_A          7 GSGRLFVRNLSYTSSEEDLEKLFS.[1].YGPLSELHYPIDSLT.[3].KGFAFVTFM.[1].PEHAVKAYAE.[5].FQ 76   house mouse
CAH65117       76 ESGRLFVRNLPFTSTEEDLEKIFS.[1].YGPLSEIHFPIDRLT.[3].KGFAFITYM.[1].PEHAVKAYAE.[5].FQ 145  chicken
NP_001088073  384 ESGRLFVRNLPYSCTEDDLDKLFS.[1].YGPISEIHFPIDSLT.[3].KGFAFVTFL.[1].TEHAVKAYAE.[5].FQ 453  African clawed frog
XP_001639550  361 ESGRLFLRNLAYSCSEEDIQHLFE.[1].FGPLSEVNLPLDKHT.[3].IGIGFVTFL.[1].PEHAVKAFNE.[5].FQ 430  starlet sea anemone
EFX87687      311 ESGRIFIRNLAYTATEEDIEALFS.[1].YGPLAETHLPIDKHS.[3].KGFAFVTYV.[1].PEHAVRAYTA.[5].FQ 380  common water flea
XP_002612017  263 ESGRLFIRNLPYLCKEEDLEGLFT.[1].YGPLTECHIPIDTFT.[3].MGIAFVTFM.[1].PEHAVTAFSQ.[5].FM 332  Florida lancelet
NP_648337     362 ESGRIFFRNLAYTTTEEDLRKLFE.[1].FGPVVEVNLPLDKLT.[3].KGFGTVTYM.[1].PEHALKAFNT.[5].FH 431  fruit fly
EGD82752      501 ETGRIFVRNLAYVCTEDDIRALFE.[1].FGPLSEVHMPLDTQT.[3].KGIAFVTFL.[1].PENAVKAFTQ.[5].FK 570  Salpingoeca sp. AT...
XP_007900519  410 DSGRLFVRNLPYTCTEEDLEKIFS.[1].TGPIAEIHFPIDSLT.[3].KGFAFVTYM.[1].PEHAVKALAE.[5].FQ 479  elephant shark
XP_014346967  398 ESGRLFVRNLPYTCMEEDLEKMFS.[1].YGPLSEVLFPIDSLT.[3].KGFAFVTYM.[1].PEHAVKAYAA.[5].LQ 467  coelacanth
AAP82506      396 ESGRLFIRNMPYTCTEEDLKEVFS.[1].HGPLSEVLFPIDSLT.[3].KGFAFVTYM.[1].PENAVSALAQ.[5].FQ 465  zebrafish

1WHW_A         77 GRMLHVLPS 85   house mouse
CAH65117      146 GRMMHLLPS 154  chicken
NP_001088073  454 GRLLHVLPS 462  African clawed frog
XP_001639550  431 GRLLHILPA 439  starlet sea anemone
EFX87687      381 GRMLHLIAG 389  common water flea
XP_002612017  333 GRLLHILPG 341  Florida lancelet
NP_648337     432 GRLLHLLPS 440  fruit fly
EGD82752      571 GRLLHLLPA 579  Salpingoeca sp. ATCC50818
XP_007900519  480 GRMLHILPS 488  elephant shark
XP_014346967  468 GRMIHILPS 476  coelacanth
AAP82506      466 GRVLHVMAS 474  zebrafish
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