Conserved Protein Domain Family
RRM_PPIL4

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cd12235: RRM_PPIL4 
RNA recognition motif (RRM) found in peptidyl-prolyl cis-trans isomerase-like 4 (PPIase) and similar proteins
This subfamily corresponds to the RRM of PPIase, also termed cyclophilin-like protein PPIL4, or rotamase PPIL4, a novel nuclear RNA-binding protein encoded by cyclophilin-like PPIL4 gene. The precise role of PPIase remains unclear. PPIase contains a conserved N-terminal peptidyl-prolyl cistrans isomerase (PPIase) motif, a central RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a lysine rich domain, and a pair of bipartite nuclear targeting sequences (NLS) at the C-terminus.
Statistics
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PSSM-Id: 409681
Aligned: 31 rows
Threshold Bit Score: 141.64
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Q8WUA2       237 PPENVLFVCKLNP.[3].DEDLEIIFSRFG.[1].IRSCEVIRD.[1].KTGESLCYAFIEFEKEEDCEKAFFKMDNVLI 306 human
AAL24306     240 PPDNVLFVCKLNP.[3].DEDLHTIFSRFG.[1].VVSADVIRD.[1].KTGDSLCYAFIEFENKESCEQAYFKMDNALI 309 thale cress
EFN52100     236 PPPNMLFICKLNP.[3].EEDLEIIFSRFG.[1].ITSCDIIRD.[1].KTGDSLNYGFIGFDSEESCEQAYFKMNNVLI 305 Chlorella variabilis
XP_001697322 236 PPPNMLFICKLNP.[3].EEDLEIIFSRFG.[1].VTSCDIIRD.[1].KTGDSLNYGFIGFDSDEACEAAYFKMNNAVI 305 Chlamydomonas reinha...
CAC35733     222 PPENVLYVCKLNP.[3].EKDLEVIFSKFG.[1].IKNCEVVRD.[1].KTGSSLQYAFIEFETIAACEEAYMKMENVII 291 Paramecium tetraurelia
AET37375     238 PAENVLFICKLNP.[3].AEHIATIFERFG.[1].VLSVEIVRD.[1].KTGNSLGYGFIEFETKEACEQAYSKMDNTLI 307 Eremothecium cymbala...
CBH11382     421 PEGNVLFVCRLNP.[3].SEGLEMCFSQFG.[1].VKSAQVIRD.[1].KTGDSLCYGFVEFADEETCYRAHQKMDNALI 490 Trypanosoma brucei g...
XP_654797    225 PLENVLFICKMNP.[3].EEDLEEIFRKYG.[1].IRSVEIIRD.[1].KSKKSLGYGFIEFETKEGCENAYQKMDNVII 294 Entamoeba histolytic...
XP_002678780 276 PPDSVLFVCRLNP.[3].EKSLRTIFLQYG.[1].IVKCEIVKN.[1].KTGKSKTYAFIEFEDAESCERAFLKSEGLVI 345 Naegleria gruberi st...
EAL61158     240 PPDHVLFVCKLNP.[3].AEDLELVFSQCG.[1].VKSCEVVRD.[1].VTNDSLCYAFVEYSTKEECEKAYLKLENILI 309 Dictyostelium discoi...

Q8WUA2       307 DDRRIHVDFSQSV 319 human
AAL24306     310 DDRRIHVDFSQSV 322 thale cress
EFN52100     306 DDRRIKVDFSQSV 318 Chlorella variabilis
XP_001697322 306 DDRRVRVDFSQSV 318 Chlamydomonas reinhardtii
CAC35733     292 DERRIHVDFCQSA 304 Paramecium tetraurelia
AET37375     308 DDRRIHVDFSQSI 320 Eremothecium cymbalariae DBVPG#7215
CBH11382     491 DDRRIHVDFSQSV 503 Trypanosoma brucei gambiense DAL972
XP_654797    295 DERRIHVDFSQSI 307 Entamoeba histolytica HM-1:IMSS
XP_002678780 346 DDHKIHVDFSQSI 358 Naegleria gruberi strain NEG-M
EAL61158     310 DERRIHVDFCQSV 322 Dictyostelium discoideum AX4
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