4ZPJ


Conserved Protein Domain Family
PBP1_alkylbenzenes-like

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cd06360: PBP1_alkylbenzenes-like 
Click on image for an interactive view with Cn3D
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene
This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Statistics
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PSSM-Id: 380583
Aligned: 14 rows
Threshold Bit Score: 477.173
Created: 30-Jan-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ligandputative dimer
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to Rhodopseudomonas palustris solute binding protein of ABC transporter (RPA0985)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:

Feature 1                                                                               ###
4ZPJ_A     56 RIGVLLTLSG.[4].NGEGNLRGLTLAL.[8].GRPVELIIEDS.[4].EQAITKTRQLIE.[2].RVHLIAGITLS 130 Sphaerobacter thermophilus...
ADU51893   47 RIGVLLPYSG.[4].LGENITRGMELYF.[8].GRKVELKKEDD.[4].QQGLPKARQLVE.[2].KVHLLAGIVHS 121 Thermaerobacter marianensi...
ODS74481   32 RIGVLSPNTG.[4].IGEDVRNGFQLYV.[8].GARLELVFEDS.[4].DVGLTKARKLVE.[2].KVAFLGGVVSS 106 Bordetella sp. SCN 67-23
OLD96994   31 KIGLLLPYTG.[4].NGQETTRGIEFFL.[8].GREIQLLKEDD.[4].DVGQTKIRKLVE.[2].KVDVLVGPVHS 105 Candidatus Rokubacteria ba...
AFM23569   34 KVGYMISLSG.[4].LGVDLRDGFNLYM.[8].GREIKVFVEDK.[5].SRALDIAKKLFE.[2].HVDILAGIVGT 109 Desulfomonile tiedjei DSM ...
SEB89694   27 KIGLILPLSG.[4].NGEDTLTGTRIYF.[8].GRKIELIVEDE.[4].DVGLTKARKLVE.[2].KVQILAGFVST 101 Beijerinckia sp. 28-YEA-48
OFZ91343   28 KIGLLYPTSG.[4].PAKQGVQGATLAF.[8].GRKIVTIVEDD.[4].EVALAKAKKLAE.[2].RVNVLMGIIWS 102 Betaproteobacteria bacteri...
SED87467   31 KIGVLHPLTG.[4].VGIESTDGFVHYF.[8].GRPVTILKEDD.[4].SQGLERTRRLVE.[2].RIHILSGLTSS 105 Beijerinckia sp. 28-YEA-48
ACM06461   72 KIGVVVAQTG.[4].SGRRHIEGMQLAL.[8].GRQLQLLPADS.[4].DQAKTHVRRLVE.[2].KVDVITGFTIT 146 Thermomicrobium roseum DSM...
OLD93517   25 KIGVLNELTG.[4].NGSEVNEGIKLYW.[9].GRPVRLIVEDS.[4].DVGLTKARKLVE.[2].GAHLILGPVSS 100 Candidatus Rokubacteria ba...

Feature 1                                ###              # #                         #     # 
4ZPJ_A    131 .[1].EAAAVRDI.[3].AEXPTIVTNAGLQ.[10].PYLFRVSFANGQYDAPAADYAY.[6].RXVLHAADY.[1].AG 205 Sphaerobacter thermophi...
ADU51893  122 .[1].VADAIRDY.[3].QRIPLVIANAGAA.[10].PFIFRTSFANGQYESVMGTYAY.[6].KVAVIAPDY.[1].AG 196 Thermaerobacter mariane...
ODS74481  107 .[1].VAYALRDY.[3].KNIPYVVSVSSAD.[ 8].PNIFRTNSSGSQASHPFGKWLY.[5].RLVLVATGY.[1].AG 178 Bordetella sp. SCN 67-23
OLD96994  106 .[1].VALAIRDY.[3].QGIPLIVPVAFTR.[ 9].PWIFRVVETSDQGNFPMGTWVF.[6].KMVVIASDF.[1].AG 179 Candidatus Rokubacteria...
AFM23569  110 .[1].SAYALAEF.[3].HKIPFVISNAGAD.[ 8].PYIVRPAFVNSGGSHPLGEWLY.[5].NAVLMGADY.[1].AG 181 Desulfomonile tiedjei D...
SEB89694  102 .[1].VALAVNDY.[3].KKIPTVISGDAGS.[11].PYVVRTSQNGRTPAAAAAAFAY.[5].KVATMTSDY.[1].GG 176 Beijerinckia sp. 28-YEA-48
OFZ91343  103 .[1].NAMALRGY.[3].RKLPLVISEAAPR.[ 8].PYIFRTGFASGQLDYPFGQYAC.[6].KIVVIAFDS.[1].FG 175 Betaproteobacteria bact...
SED87467  106 .[1].VAYALRSY.[3].RQIPLVIMGSAGA.[ 9].SYIFRTSFSNRQLAAPIGQYAC.[6].KIVVMASDF.[1].TG 179 Beijerinckia sp. 28-YEA-48
ACM06461  147 .[1].ELTAVRDY.[3].QKQVTIVSIAGWP.[10].PYIFRSSFCQGQYEFIQAKWAY.[6].NIALMAPDY.[1].TG 221 Thermomicrobium roseum ...
OLD93517  101 .[1].VAAAFRDY.[3].RKVPTIITQATAN.[ 8].PFVFRSAMSSYQQEAAGGWYVS.[6].RIAVVALDY.[1].AG 173 Candidatus Rokubacteria...

Feature 1                                                       #                             
4ZPJ_A    206 HEEXAAFRSRF.[4].GEIVDEVVA.[6].FGPYLQRIEQA.[5].AVFAFHGT.[3].AIRFLVQYQEF.[5].IPLIP 283 Sphaerobacter thermophi...
ADU51893  197 HEKAEAFKQYF.[4].GQVVNEVYP.[6].FAPYLQRLQQT.[1].ADAVWAFF.[4].AIRFVQQYALS.[5].VPLIG 271 Thermaerobacter mariane...
ODS74481  179 FEQTGGIARTF.[4].GKIVQTLYP.[6].FAPFLSSIKVK.[1].ADAVAAVF.[4].AIKFVKQYDEY.[5].LPLVA 253 Bordetella sp. SCN 67-23
OLD96994  180 RHSAEAFTAAF.[4].GEVVKEIYA.[6].FAPYVAQVAAL.[1].ADAVYAWF.[4].SIRFVRAYKEY.[5].LPLLA 254 Candidatus Rokubacteria...
AFM23569  182 YEHVGGIARTF.[4].GKVVQEIWP.[6].YAPYLAKIDRK     ADVVMVFF.[4].ALRFVKQYADY.[5].VALVG 255 Desulfomonile tiedjei D...
SEB89694  177 FDTIGGFAQAF.[4].GTIVQEQYP.[6].YGPYVTNVQSG     VDGVVTFL.[4].GLKFVKQFDEL.[5].YPLMD 250 Beijerinckia sp. 28-YEA-48
OFZ91343  176 RELGDFIDAGC.[4].GAVVEKIYA.[6].FAPYFARIQQA.[1].PDAVWALW.[4].ALRFLKQYDDF.[5].YPLIG 250 Betaproteobacteria bact...
SED87467  180 HEQSAAFGERY.[4].CTVVRTIMV.[6].FTPFLGQVASL.[1].ADGVWAMF.[4].AIAFVKQYEAL.[5].LPLIG 254 Beijerinckia sp. 28-YEA-48
ACM06461  222 RTVAQIFGDYF.[4].GQIAAEVYP.[6].FGPYLQRILQD.[3].ADAVWAWF.[4].AIRFMTQYQEF.[5].YPLLG 298 Thermomicrobium roseum ...
OLD93517  174 HEQADGFVKTF.[4].GQSVEKVLM.[6].VAPYITRIHSK.[3].LDAVVGIL.[4].APQWMKAWDEY.[5].LPLLG 250 Candidatus Rokubacteria...

Feature 1                                                         #                           
4ZPJ_A    284 SG.[11].GDAALGLVSGTLYTAYN.[2].PESQEFVEAFTARH.[4].PGLVDYAGYIGGRVIAEALT.[10].ALLEA 368 Sphaerobacter thermophi...
ADU51893  272 AG.[11].GDAALGVVTSLHYSPLI.[2].QENEAFVKAYREKY.[3].PNQFAYQGYLTARVIAEAIK.[10].AFLAA 355 Thermaerobacter mariane...
ODS74481  254 SS.[11].GKSALGILSSSHYSARV.[2].PENEAFVKAYQKRF.[3].PTFYSEGSYVAARAIGEAIK.[10].KVNKT 337 Bordetella sp. SCN 67-23
OLD96994  255 YN.[11].GDAALGVVSVGHYSAAL.[2].PENRAFVREYEAKY.[3].PTRYAELGYVSGQLIGAALE.[10].AARDA 338 Candidatus Rokubacteria...
AFM23569  256 KG.[11].ADSAEGIITESHYCLLL.[2].PENDKFRQAYTKKY.[3].PTLYSEQGYLTAKLIADALE.[10].FVKVM 339 Desulfomonile tiedjei D...
SEB89694  251 IF.[12].GDAALGIYSTLHYAPTL.[2].PENEAFVAEYMKRA.[3].PSDNGPDGWAGARAIADAIK.[10].KFLAA 335 Beijerinckia sp. 28-YEA-48
OFZ91343  251 HG.[11].GPVAQGVVSYYNWSPAI.[2].PENKRFVEAYRKRW.[3].PGVYSAGGYRAASAIVAAAK.[10].KFLEA 334 Betaproteobacteria bact...
SED87467  255 PS.[11].GAAATGIMAPIYYTTLL.[2].PENKAFVQSFKARY.[3].PGATAASGYIAAMAIARAIE.[10].ALLAA 338 Beijerinckia sp. 28-YEA-48
ACM06461  299 GA.[11].GEAALGIVSAINYAARY.[2].PQNKEFVAKFQQKF.[3].PGHLEYWGYITVMILAHALE.[10].AFLQA 382 Thermomicrobium roseum ...
OLD93517  251 LG.[11].GDAAIGIVSWLSYSPAL.[2].PENKRFVQVFKKKY.[3].PVYNNHLGYLAAKAGGEALR.[10].RYLEA 334 Candidatus Rokubacteria...

Feature 1                                                                  
4ZPJ_A    369 .[ 8].PAGNFRFHP.[1].SQGPV     TTILLCR.[3].LDDGTYANIVVDRIPDFDD 420 Sphaerobacter thermophilus DSM 20745
ADU51893  356 .[ 8].PAGPFRFDP.[1].SQNVV.[1].TVYIRRV.[2].LPDGTLGNVVIDQFPDVSD 407 Thermaerobacter marianensis DSM 12885
ODS74481  338 .[ 8].PRGAFRFDD.[1].RSPVH     DIYVFEV.[1].RVDGKLVNEPVAKVPDVSQ 387 Bordetella sp. SCN 67-23
OLD96994  339 .[10].PRGPIRFDR.[1].QQVVT     DVYVMRV.[1].RQGNRLVNAIVDRIPGTSQ 390 Candidatus Rokubacteria bacterium 13_1_20C...
AFM23569  340 .[ 7].PRGLVKFDT.[1].GGTNQ     NSYIREV.[1].KVDGKWQNVPIKTYNGVSQ 388 Desulfomonile tiedjei DSM 6799
SEB89694  336 .[ 8].PKGNISFDK.[1].GQLIQ     TMYVRKV.[1].KTKDGYANVVIEKFDNVDQ 385 Beijerinckia sp. 28-YEA-48
OFZ91343  335 .[ 7].TPSPIRFDA.[1].QQAVH     SLYIRKV.[2].GPGGKLVNAVIGEVRGIEQ 384 Betaproteobacteria bacterium RBG_16_64_18
SED87467  339 .[ 8].PIGMFEFDA.[1].QNIVL     DFYLGKV.[2].SESGYTLQVVEPLEKAVDQ 389 Beijerinckia sp. 28-YEA-48
ACM06461  383 .[ 8].PMNEVRFHP.[1].AQGVI     TTVLVRR.[3].LPDGTLGNVVLDEYPNIDD 434 Thermomicrobium roseum DSM 5159
OLD93517  335 .[ 8].PGGAFRFDD.[1].QNAVI     PTYIRRV.[1].PVGGKLQNSVIDAVLDVDQ 384 Candidatus Rokubacteria bacterium 13_1_20C...

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