Conserved Protein Domain Family
ABC_putative_ATPase

?
cd03269: ABC_putative_ATPase 
ATP-binding cassette domain of an uncharacterized transporter
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Statistics
?
PSSM-Id: 213236
Aligned: 12 rows
Threshold Bit Score: 331.167
Created: 16-Jan-2006
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:

Feature 1                                          ## ###                               #       
AAQ66076      4 LEANHIRKRYATHTALDDVSISVRKGRVFGLLGPNGAGKTSLIRIINRITAPDEGEVIFDG.[10].IGYLPEERGLYPK 87  Porphyromonas gingiva...
BAB80413      3 VEAQNISKTFGEVQALKDLSFVIEKGKALGLLGRNGAGKTTAIRILLGILPSDTGKVLVDN.[ 9].FGYLPEERGLYLK 85  Clostridium perfringe...
NP_633081     4 LEFKGVSKSFAEKNVIRDISFSVEKGEIFGLLGPNGAGKTTLIRLLLDIIKPDSGEIHVFG.[10].IGYLPEERGLYKK 87  Methanosarcina mazei Go1
NP_694004     5 LHVQNLKKSFKDKQALKGISFEVHRGEIMAILGPNGAGKSTTIRNIMGIMYPDSGTIQFNY.[ 9].IGYLPEERGLYKN 87  Oceanobacillus iheyen...
Q58429        5 IKVENLTKYFGDKKVLDEISFEVYEGEIFGLLGHNGAGKTTTLRILAGIIEEYTGYVEVNG.[ 1].IGYLPEERGLYRD 79  Methanocaldococcus ja...
ZP_00310075   5 LKLEAVTKIFGSYTAIESVSLSLKKNSVLGLLGPNGAGKTTLLRLITQIVLPDSGQLFFNG.[10].MGYLPEERGLYRK 88  Cytophaga hutchinsonii
YP_062276    14 VHIANFRMDFGRTTVIRDLSFDIARGETFGFLGSNGSGKTTTIRALLGIYQPTAGVLHIDG.[10].LGYLPEERGLYKK 97  Leifsonia xyli subsp....
YP_076438     3 LQVLDVYKAFGPVRAVQGVSFTVPAGRVCGLLGSNGAGKTTTMRMIMRIFLPDRGEIQWKG.[10].FGYLPEERGLYPK 86  Symbiobacterium therm...
YP_120576     4 LELEGLAKRFGAVTALADVGFEVGAGEIFGFVGSNGAGKSTTMRIVLGVLAPDAGKVVFDG.[10].FGYMPEERGLYPK 87  Nocardia farcinica IF...
AAV81117      3 LSVNNVTKRYRTVTAVDAISLDIQPGKIQALLGPNGAGKSSLVRMLVGLTQPDEGEILVEN.[11].FAYLPEDRGLYQD 87  Idiomarina loihiensis...
YP_146497     3 LEIIEVTKRFGQATAVDHLTLTVPEGEMFGLLGANGAGKTTTFRMILGLLLPTEGVIRWQG.[10].IGYLPEERGLYPK 86  Geobacillus kaustophi...
YP_181578     4 IETHGITKIYGRNVIVNDLSLSLERGQIMGLIGPNGAGKTTTIRMIMDIIKPDSGKVLILD.[10].IGYLPEERGLYRK 87  Dehalococcoides ethen...

Feature 1                                                                           ##          
AAQ66076     88 MKVGEQAIYLAQLKGVNKHEARKRLTDWFEKFDIMPWWNKKVEELSKGMQQKVQFVCTVIHEPELLIFDEPFSGFDPVNA 167 Porphyromonas gingiva...
BAB80413     86 YTVKSQLMHFASLYGMKKKEALNSIEYWLEKFEISEYLNKKVETLSKGNKQKIQLIVAVMHDPEVIILDEPFSGLDPVNV 165 Clostridium perfringe...
NP_633081    88 TKILDMLVYLARLKNVPKKEAQANAEELLKSLELYEHREKRIEELSKGMQQKIQFLSSIIHDPELIILDEPFSGLDPVST 167 Methanosarcina mazei Go1
NP_694004    88 VKVMDILLYLADLKDYPIQQAKERVLYYLKKFDLEGKENVSVEELSKGMGQKVQFIGSIIHEPDLLILDEPFSGLDPVSQ 167 Oceanobacillus iheyen...
Q58429       80 EKVVDVLKFFGELAGMKKEEIAKSIDYWLNKLKISNYKYSKIKELSKGNQQKVQFIVSVIHNPDIVILDEPFSGLDVVNV 159 Methanocaldococcus ja...
ZP_00310075  89 MRVQEQLIYFAQLRGLSPREAKHQSRDWLKRLEIEHLQSQVLETLSKGQQQKIQFISAVVHQPELLILDEPFSGFDPANA 168 Cytophaga hutchinsonii
YP_062276    98 ESVIDVMVYFGRLKGLGREYARRWSREYLERVGLGEKEKIRLDKLSGGQQQKVQLGVTIMNQPKLLILDEPTKGFDPVNR 177 Leifsonia xyli subsp....
YP_076438    87 MQVREQLIYLTQLKGLSHAEAARQVDRWIERLELGEYALRRVEQLSKGNQQKVQFAAAAASRPELCILDEPFTGLDPMNT 166 Symbiobacterium therm...
YP_120576    88 MRVAEQLRYLAQLHGLTRRDAAREVDRWCERLGLADKRERRLEELSLGNQQRAQLAAALVHRPRLLVLDEPFSGLDPVAV 167 Nocardia farcinica IF...
AAV81117     88 RTILDNLNYIASLRGLKLSDIRSDIDSWLERFELTDRKDEPLRQMSKGNQQKVQLIATLLHDPQLVILDEPFSGLDPVNQ 167 Idiomarina loihiensis...
YP_146497    87 LKVQEQLLYLGRLRGMKKTDILPEIDRWLERFHIRDYANKRVEELSKGNQQKIQFIAAVLHRPKLLILDEPFSGLDPVNV 166 Geobacillus kaustophi...
YP_181578    88 QKIIDSLVYLASLKGMNPSAARARALELLEKVGLSAHAEKKIEQLSHGMGQLVQLVSTIIHDPALMIIDEPFNGLDPVNV 167 Dehalococcoides ethen...

Feature 1                            #                        
AAQ66076    168 DLLKREILELAGKERTVIFSTHNMQSVEEVCDDFALINKSRVVLHG 213 Porphyromonas gingivalis W83
BAB80413    166 ELFKTVIRELLAKGKTLIFSSHRMADVEEFCDDIIMLKKGETILQG 211 Clostridium perfringens str. 13
NP_633081   168 KTIKSKITEYRDAGRTVILSTHMMEQAQKLCDRILMLNKGQQVLYG 213 Methanosarcina mazei Go1
NP_694004   168 DIFKDEISQLAANGTAILLSSHQMNLVEEMCDRLFMIQNGQKVIYG 213 Oceanobacillus iheyensis HTE831
Q58429      160 RLLRDIIFELKEEGKTIILSTHQLEKIERLCDRVLILKKGKAVHYG 205 Methanocaldococcus jannaschii
ZP_00310075 169 EVIKKEIQALQRSGTTIIYSTHRMDTVEDVCTELVLINQAKIVLQG 214 Cytophaga hutchinsonii
YP_062276   178 RLLMDIIDDQKRAGSTVMMVTHQMEEVERLCDRVILLKDGVSRAYG 223 Leifsonia xyli subsp. xyli str. CTCB07
YP_076438   167 LVMEQAFRTLAREGTTILFSSHNMDQVEALCDDVVLLHRSRVVLAG 212 Symbiobacterium thermophilum IAM 14863
YP_120576   168 DVMSEVLREQADAGVPVLFSSHQLDLVQRLCDRVGIIVAGRMRAVG 213 Nocardia farcinica IFM 10152
AAV81117    168 EHVLTVLNELRERGKTVVLSAHQMELVERLADTMLLMNKGRAVAQG 213 Idiomarina loihiensis L2TR
YP_146497   167 ELLKEAVLDLKRNGTTIVFSSHRMEHVEELCEHVCILRRGRAVVAG 212 Geobacillus kaustophilus HTA426
YP_181578   168 QLVKDLMMELRSQNKSLILSTHRMNEVEEMCDRVCMLNKGQQVLYG 213 Dehalococcoides ethenogenes 195

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap