Conserved Protein Domain Family
Teschovirus_RdRp

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cd23212: Teschovirus_RdRp 
RNA-dependent RNA polymerase (RdRp) in the Teschovirus genus of positive-sense single-stranded RNA [(+)ssRNA] viruses, within the family Picornaviridae
This group contains the RdRp of RNA viruses belonging to the Teschovirus genus within the family Picornaviridae, order Picornavirales. Member viruses have a (+)ssRNA genome. Teschoviruses are emerging pathogens and infect the porcine population only. There are two species in this genus, including Teschovirus A (previously Porcine teschovirus), which is responsible for the porcine enteroviral encephalomyelitis disease caused in pigs, and Teschovirus B. Teschovirus is also known by several other names including Teschen disease, Talfan disease, poliomyelitis suum, benign enzootic paresis, Klobauk disease and contagious porcine paralysis. Teschovirus has a single-stranded, linear, non-segmented RNA genome. The RNA genome is positively sensed meaning that it has the same polarity as the mRNA and no reverse transcription is necessary. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.
Statistics
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PSSM-Id: 438062
Aligned: 12 rows
Threshold Bit Score: 742.591
Created: 20-May-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
  next features
Feature 1: catalytic residues [active site], 4 residue positions
Conserved feature residue pattern:D [GS] D DClick to see conserved feature residue pattern help
Evidence:
  • Comment:contains the classic divalent-cation-binding residue D618 in the motif A of SARS-CoV-2 structure, which is conserved in most viral polymerases

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
ABC84373  1833 AMLPPDFLEPLSVRAAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGPslELMAEINRYLDYNYDKHVFLTFLKD 1912 Porcine teschovi...
BBE37015  1846 ALLPPDFLEPLSIREAVEGIDGLDPMDMDKSPGLPYVKKGLRRSDLWNPQTGPsmELMVEIDRYLDYNYTHHVFLTFLKD 1925 Porcine teschovi...
AAK12396  1833 AMLPPDFLEPLSVREAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGPslELMAEINRYLDYNYDKHVFLTFLKD 1912 Porcine teschovi...
CAB40546  1865 AMLPPDFLEPLSVREAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGSslELMAEINRYLDYNYDKHVFLTFLKD 1944 Porcine teschovi...
AHN82334  1833 AMLPPDFLEPLSVREAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGPslELMAEINRYLDYNYDKHVFLTFLKD 1912 Teschovirus A
AAK12413  1833 AMLPPDFLEPLSVREAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGPtiELMAEINRYLDYNYDKHVFLTFLKD 1912 Porcine teschovi...
ADP65803  1835 AMLPPNFLEPLSVREAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGPtiELMAEINRYLDYNYDKHVFLTFLKD 1914 Porcine teschovi...
ATL75301  1835 AMLPPDFLEPLSVREAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGPtiELMAEINRYLDYNYDKHVFLTFLKD 1914 Porcine teschovi...
AEL29703  1836 AMLPPDFLEPLSVREAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGPtiELMAEINRYLDYNYDKHVFLTFLKD 1915 Teschovirus A
AFB77227  1836 AMLPPDFLEPLSVREAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGPslELMAEINRYLDYNYDKHVFLTFLKD 1915 Teschovirus A
ATL75278  1831 AMLPPDFLEPLSVREAVEGIDGLDPMDMDKSPGLPYVKKGLRRTDLWNPKTGPtiELMAEINRYLDYNYDKHVFLTFLKD 1910 Porcine teschovi...
BBE37019  1839 ALLPHDFLEPLSIREAVEGIDGLDPMDMDKSPGLPYVKKGLRRSDLWNPQTGPsmELMVEINRYLDYNYTHHVFLTFLKD 1918 Porcine teschovi...
Feature 1                                                                               #      
ABC84373  1913 ELRPKEKVQAGKTRAIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDLAWTQIFYTAPSRNVLAMDYSGFDA 1992 Porcine teschovi...
BBE37015  1926 ELRPVEKVRDGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWHTGSAVGVNPDLAWTQLFYTAPSRRCLAMDYSGFDA 2005 Porcine teschovi...
AAK12396  1913 ELRPKEKVQAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDLAWTQIFYTAPSRNVLAMDYSGFDA 1992 Porcine teschovi...
CAB40546  1945 ELRPKEKVQAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDLAWTQIFYTAPSRNVLAMDYSGFDA 2024 Porcine teschovi...
AHN82334  1913 ELRPKEKVQAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDLAWTQIFYTAPSRNVLAMDYSGFDA 1992 Teschovirus A
AAK12413  1913 ELRPKEKVQAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDLAWTQIFYTAPSRNVLAMDYSGFDA 1992 Porcine teschovi...
ADP65803  1915 ELRPKEKVQAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDLAWTQIFYTAPSRNVLAMDYSGFDA 1994 Porcine teschovi...
ATL75301  1915 ELRPKEKVQAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDLAWTQIFYTAPSRNVLAMDYSGFDA 1994 Porcine teschovi...
AEL29703  1916 ELRPKEKVQAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDLAWTQIFYTAPSRNVLAMDYSGFDA 1995 Teschovirus A
AFB77227  1916 ELRPKEKVQAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDLAWTQIFYTAPSRNVLAMDYSGFDA 1995 Teschovirus A
ATL75278  1911 ELRPKEKVQAGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWNTGSAVGVNPDMAWTQIFYTAPSRNVLAMDYSGFDA 1990 Porcine teschovi...
BBE37019  1919 ELRPVEKVRDGKTRVIDVAGFGHAIVGRMLFGRLFAFFHKNPGWHTGSAVGVNPDLAWTQLFYTAPSRRCLAMDYSGFDA 1998 Porcine teschovi...
Feature 1                                                                                      
ABC84373  1993 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAASYAADGPVG 2072 Porcine teschovi...
BBE37015  2006 SHSSGMFCILKHFLSTLGYGALHTSYIDSLCYSQHHWDDETYRIDGGLPSGCSGTTIFNTIFNNIVARAAASYASDEPVG 2085 Porcine teschovi...
AAK12396  1993 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAASYAAEGPVG 2072 Porcine teschovi...
CAB40546  2025 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAASYAADGPVG 2104 Porcine teschovi...
AHN82334  1993 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAASYAAEGPVG 2072 Teschovirus A
AAK12413  1993 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAASYAAEGPVG 2072 Porcine teschovi...
ADP65803  1995 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAAGYAAEGPVG 2074 Porcine teschovi...
ATL75301  1995 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAASYAAEGPVG 2074 Porcine teschovi...
AEL29703  1996 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAASYAAEGPVG 2075 Teschovirus A
AFB77227  1996 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAASYAAEGPVG 2075 Teschovirus A
ATL75278  1991 SHTSGMFCILKHFLTTLGYGTLQLSYIDSLCYSKHHWDDETYRLDGGLPSGCSGTTIFNTIMNNIVARAAASYAAEGPVG 2070 Porcine teschovi...
BBE37019  1999 SHSSGMFCILKHFLSTLGYGALHTSYIDSLCYSQHHWDDETYRIDGGLPSGCSGTTIFNTILNNIVARAAASYASDEPVG 2078 Porcine teschovi...
Feature 1          ###                                                                         
ABC84373  2073 ILCYGDDILVSSPekFPVSDWLEFYSKTPYKVTAADKSEQIDWRDITQCTFLKRGFVLDGSLVRPVMEEQHLAELLKWAR 2152 Porcine teschovi...
BBE37015  2086 ILCYGDDILVSAPneFPVEDWMDFYSQTPYKVTAADKSENIEWRDITECTFLKRKFVLDGSLVRPVMDEQHLCELLKWAR 2165 Porcine teschovi...
AAK12396  2073 ILCYGDDILVSSPekFSVSDWLEFYSKTPYKVTAADKSEHIDWRDITQCTFLKRGFVLDGSLVRPVMEEQHLAELLKWAR 2152 Porcine teschovi...
CAB40546  2105 ILCYGDDILVSSPekFPVSDWLEFYSKTPYKVTAADKSEQIDWRDITQCTFLKRGFVLDGSLVRPVMEEQHLAELLKWAR 2184 Porcine teschovi...
AHN82334  2073 ILCYGDDILVSSPekFPVSDWLEFYSKTPYKVTAADKSEQIDWRDITQCTFLKRGFVLDGSLVRPVMEEQHLAELLKWAR 2152 Teschovirus A
AAK12413  2073 ILCYGDDILVSSPekFPVSDWLEFYSKTPYKVTAADKSEQIDWRDITQCTFLKRGFVLDGSLVRPVMDEQHLAELLKWAR 2152 Porcine teschovi...
ADP65803  2075 ILCYGDDILVSSPekFPVSDWLEFYSKTPYKVTAADKSEQIDWRDITQCTFLKRGFVLDGSLVRPVMEEQHLAELLKWAR 2154 Porcine teschovi...
ATL75301  2075 ILCYGDDILVSSPekFPVSDWLEFYSKTPYKVTAADKSEQIDWRDITQCTFLKRGFVLDGSLVRPVMDEQHLAELLKWAR 2154 Porcine teschovi...
AEL29703  2076 ILCYGDDILVSSPerFPVSDWLEFYSKTPYKVTAADKSEQIDWRDITQCTFLKRGFVLDGSLVRPVMEEHHLAELLKWAR 2155 Teschovirus A
AFB77227  2076 ILCYGDDILVSSPekFPVSDWLEFYSKTPYKVTAADKSEQIDWRDITQCTFLKRGFVLDGSLVRPVMEEQHLAELLKWAR 2155 Teschovirus A
ATL75278  2071 ILCYGDDILVSSPekFSVSDWLEFYSKTPYKVTAADKSEQIDWRDITQCTFLKRGFVLDGSLVRPVMEEQHLAELLKWAR 2150 Porcine teschovi...
BBE37019  2079 ILCYGDDILVSASneFPVKDWMDFYSQTPYKITAADKSENIEWRDITECTFLKRKFVLDGSLVRPVMDEQHLGELLKWAR 2158 Porcine teschovi...
Feature 1                                        
ABC84373  2153 PGTLQAKLLSIAQLAFhLPRSAYDRLMLPFEEAG 2186 Porcine teschovirus 1
BBE37015  2166 PGTLQAKLLSIAQLAYhLPRDAYERLMSPFEEAG 2199 Porcine teschovirus 15
AAK12396  2153 PGTLQAKLLSIAQLAFhLPRQAYNRLMLPFEEAG 2186 Porcine teschovirus 1
CAB40546  2185 PGTLQAKLLSIAQLAFhLPRSAYNRLMLPFEEAG 2218 Porcine teschovirus 1
AHN82334  2153 PGTLQAKLLSIAQLAFhLPRQAYERLMLPFEEAG 2186 Teschovirus A
AAK12413  2153 PGTLQAKLLSIAQLAFhLPRQAYDRLMLPFEEAG 2186 Porcine teschovirus 10
ADP65803  2155 PGTLQAKLLSIAQLAFhLPRPAYDRLMLPFEEAG 2188 Porcine teschovirus 2
ATL75301  2155 PGTLQAKLLSIAQLAFhLPRQAYDRLMLPFEEAG 2188 Porcine teschovirus 4
AEL29703  2156 PGTLQAKLLSIAQLAFhLPRQAYDRLMLPFEEAG 2189 Teschovirus A
AFB77227  2156 PGTLQAKLLSIAQLAFhLPRSAYDRLMLPFEEAG 2189 Teschovirus A
ATL75278  2151 PGTLQAKLLSIAQLAFhLPRQAYDRLMLPFEEAG 2184 Porcine teschovirus 9
BBE37019  2159 PGTLQAKLLSIAQLAYhLPRDAYERLMSPFEEAG 2192 Porcine teschovirus 16

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