Conserved Protein Domain Family
ps-ssRNAv_Alsuviricetes_RdRp

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cd23182: ps-ssRNAv_Alsuviricetes_RdRp 
catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the class Alsuviricetes of positive-sense single-stranded RNA [(+)ssRNA] viruses
This group contains the catalytic core domain of RdRp of RNA viruses belonging to the class Alsuviricetes, phylum: Kitrinoviricota. Alsuviricetes is a class of [(+)ssRNA] viruses which infect eukaryotes. The name of the group is a syllabic abbreviation of "alpha supergroup" with the suffix -viricetes indicating a virus class. The class Alsuviricetes includes three orders: Hepelivirales, Martellivirales, and Tymovirales. The RdRp domain displays a right hand with three functional subdomains, called fingers, palm, and thumb. All RdRps contain conserved polymerase motifs (A-G), located in the palm (A-E motifs) and finger (F-G) subdomains. All these motifs have been implicated in RdRp fidelity such as processes of correct incorporation and reorganization of nucleotides.
Statistics
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PSSM-Id: 438032
Aligned: 4 rows
Threshold Bit Score: 264.075
Created: 29-May-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Feature 1: catalytic residues [active site], 4 residue positions
Conserved feature residue pattern:D [GS] D DClick to see conserved feature residue pattern help
Evidence:
  • Comment:contains the classic divalent-cation-binding residue D618 in the motif A of SARS-CoV-2 structure, which is conserved in most viral polymerases

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
P05080    1367 SSYMYMIKSDVKpktdl------------------tpqfEYSALQTVVYHEKlINSLFGPIFKEineRKLDAmqpHFVFN 1428 Tobacco rattle v...
NP_783203 1223 TRDQDPILRDNKkvlnflkgqlinkldaitkgsgaesfpTIKPAQMITTYTEeVNAAFGPYIRYlacKLREHspdHVMHY 1302 Oyster mushroom ...
Q67724    1046 RDIDFLMKTQQKvspk--------------------pinTGKVGQGIAAHSKsLNFVLAAWIRIleeILRTGsrtVRYSN 1105 Helicoverpa armi...
NP_040968 1488 TAVRIFAKAQHKvnda-------------------sifsGWKACQTLALMHGyIILVLGPVKKYq--RIFDSkdrPPHIY 1546 Eggplant mosaic ...
Feature 1                                      #                                               
P05080    1429 Trmt------ssDLNDRVKflnteaayDFVEIDMSKFDKSANRFHLQLQLeiyrlfgldewaafLWEVSHTqtTVRDIQn 1502 Tobacco rattle v...
NP_783203 1303 Ggmdln--dlgqWAREHVPsk----rtKSFTNDYTAYDKSCRGETLAFEIcimrl----fnipeWIIELHV--ELTLCVt 1370 Oyster mushroom ...
Q67724    1106 GlpdeeeamlleAKINQVPh------aTFVSADWTEFDTAHNNTSELLFAallerigtpaaavnLFRERCGkrTLRAKGl 1179 Helicoverpa armi...
NP_040968 1547 YhcgktpsqlsqWCQTHLSg------sSYIANDYTAFDQSQHGEAVVLEClkmrr----lsipdSLIQLHS--HLKCSVd 1614 Eggplant mosaic ...
Feature 1                                                  ###      
P05080    1503 gMMAHIWyQQKSGDADTYNANSDRTLcALLSELplekaVMVTyGGDDSLIAFP 1555 Tobacco rattle virus-SYM
NP_783203 1371 sALGKLGiMRTSGQWCTYLFNTWYNDaYFTLKYvfplnTPRGfSGDDMFILCV 1423 Oyster mushroom spherical virus
Q67724    1180 -GSVEVDgLLDSGAAWTPCRNTIFSAaVMLTLFrg--vKFAAfKGDDSLLCGS 1229 Helicoverpa armigera stunt virus
NP_040968 1615 tQFGPLTcMRLTGEPGTYDDNSDYNLaVIYSQYsl-ngHPILiSGDDSVLCGT 1666 Eggplant mosaic virus

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