Conserved Protein Domain Family
mRING-HC-C3HC3D_TRAF4-like

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cd23126: mRING-HC-C3HC3D_TRAF4-like 
Modified RING finger, HC subclass (C3HC3D-type), found in uncharacterized proteins similar to tumor necrosis factor (TNF) receptor-associated factor 4 (TRAF4)
This subfamily corresponds to a group of uncharacterized proteins that shows high sequence similarity with tumor necrosis factor (TNF) receptor-associated factor 4 (TRAF4). TRAF4, also known as cysteine-rich domain associated with RING and Traf domains protein 1, or metastatic lymph node gene 62 protein (MLN 62), or RING finger protein 83 (RNF83), is a member of TRAF protein family, which mainly function in the immune system, where they mediate signaling through tumor necrosis factor receptors (TNFRs) and interleukin-1/Toll-like receptors (IL-1/TLRs). It also plays a critical role in the nervous system, as well as in carcinogenesis. Like TRAF4, members of this subfamily contain a modified C3HC3D-type RING-HC finger.
Statistics
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PSSM-Id: 438488
Aligned: 13 rows
Threshold Bit Score: 84.311
Created: 15-Jun-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C DClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other proteins with a C3HC3D-type RING finger with bound Zn2+ ions
  • Comment:modified RING-HC finger (C3HC3D-type)
  • Comment:consensus of the typical C3HC4-type RING-HC finger: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, X is any amino acid and the number of X residues varies in different fingers.
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  #            # #  #  #            #  #       
XP_002739073  77 VDKKYECAACCQVLRYPvQFEDCGHRVCSSCLPDLLRv--sPRCPIDQAPVTRD 128 Saccoglossus kowalevskii
CAX73935      84 LDNIYRCVNCKCVLRVPfLFEDCGHRCCSGCVPDIFRa--tSKCPVDKQNLKKD 135 Schistosoma japonicum
XP_780297     68 VNKKYLCTVCQQILRYPvQFEECGHRCCSACLPDLLRv--sPRCPLDQAPVARD 119 purple sea urchin
ELU13993      63 LEKCFECPVCCRLMRNPvQFQECGHRCCSTCVPELLRv--vPRCPIDQRFIDKD 114 Capitella teleta
PAA62246      79 LDKKYECPVCGQVLRYPvQFEECGHRCCSSCLPDLLRv--aPRCPLDQVAIDKD 130 Macrostomum lignano
XP_020628997  80 LEKKCQCPICESVLRYPvQFKECGHRVCSSCFPELARv--ePRCPVDQIPINKD 131 Orbicella faveolata
XP_019622390 385 LEKRFECPVCRQVLRFPvEFQECGHHVCSQCIPELVRt--sGACPIDNKTISRD 436 Belcher's lancelet
RDD40713      16 VDEKYRCIVCGNVLCYPlQFKTCGHRTCSGCLKEVLRsksnPKCPIDGVNISIE 69  Trichoplax sp. H2
XP_022807391  64 LDEKYQCPVCKDVLLNPvQFEECGHRVCRNCFPSIIRv--ePRCPIGMHPIDKD 115 Stylophora pistillata
XP_022344520  42 LDKAYECPVCCEVLNHPvLFEKCGHRCCATCLGEIMRg--gGKCPIDQQAIDRD 93  eastern oyster
XP_028400905  95 LEKKYECPSCDEVLRYPvLLEECGHRVCSHCFETEIKrsdnRRCPVDRGKIDVD 148 Dendronephthya gigantea
XP_004207529 116 LKSDHTCPQCNEAMRYPvQFSECKHRVCSACFHEFFRt--ePRCPVDQGKINRE 167 swiftwater hydra
XP_013420704  51 LEKKYECPVCCQVLRYPiQFDECGHRCCSSCLPELLRv--aPRCPIDQRHIDRD 102 Lingula anatina

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