6WFV,6FXX,6FXK,6FXM,6FXR,6FXT,6FXY


Conserved Protein Domain Family
GT_LH3

?
cd23002: GT_LH3 
Click on image for an interactive view with Cn3D
catalytic glycosyltransferase (GT) domain found in lysyl hydroxylase 3 (LH3) and similar proteins
Lysyl hydroxylase 3 (LH3; EC 1.14.11.4/EC 2.4.1.50/EC 2.4.1.66), also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 (PLOD3), or multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3, is a multifunctional enzyme that catalyzes a series of essential post-translational modifications on Lys residues in procollagen. It converts collagen lysines into 1,2-glucosylgalactosyl-5-hydroxylysines through three consecutive reactions: hydroxylation of collagen lysines (LH activity), N-linked conjugation of galactose to hydroxylysines (GT activity), and conjugation of glucose to galactosyl-5-hydroxylysines (GGT activity). LH3 monomer encompasses three domains; the first two N-terminal domains (catalytic glycosyltransferase domain and accessory domain) show Rossmann-fold architectures reminiscent of glycosyltransferases, whereas the C-terminal domain is characterized by a double-stranded beta-helix (DSBH) fold, highly conserved among the 2-oxoglutarate, Fe2+-dependent dioxygenases. This model corresponds to the N-terminal catalytic glycosyltransferase (GT) domain, which is solely responsible for glycosyltransferase activities (both GT and GGT).
Statistics
?
PSSM-Id: 438558
Aligned: 13 rows
Threshold Bit Score: 452.726
Created: 14-May-2021
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
 
Mn binding siteUDP binding
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:Mn binding site [ion binding site]
Evidence:
  • Structure:6FXX: Homo sapiens lysyl hydroxylase LH3 binds Mn2+ ion.
  • Structure:6WFV: Homo sapiens LH3 binds Mn2+ ion.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                   #  # 
6WFV_A        18 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVartvGGGQKVRWLKKEMEkyaDREDMIIMFVDSYDV 97  human
6FXX_A        14 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVartvGGGQKVRWLKKEMEkyaDREDMIIMFVDSYDV 93  human
6FXK_A        14 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVartvGGGQKVRWLKKEMEkyaDREDMIIMFVDSYDV 93  human
6FXM_A        14 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVartvGGGQKVRWLKKEMEkyaDREDMIIMFVDSYDV 93  human
6FXR_A        14 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVartvGGGQKVRWLKKEMEkyaDREDMIIMFVDSYDV 93  human
6FXT_A        14 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVartvGGGQKVRWLKKEMEkyaDREDMIIMFVDSYDV 93  human
6FXY_A        14 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVartvGGGQKVRWLKKEMEkyaDREDMIIMFVDSYDV 93  human
O60568        37 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVartvGGGQKVRWLKKEMEkyaDREDMIIMFVDSYDV 116 human
NP_001080446  31 DKLLVVTVATEATEGYLRFLRTARHFNYTVRTLGLGHEWKGGDVartvGGGQKVRWLKHELEqhkDQDDLIIMFVDSYDV 110 African clawed ...
NP_001037808  26 NELLVITAATEVTDGYLRFMRTIRQFNYTIQVLGLGEQWRGGDVartvGGGQKVRWLKTELEkhkDKQNTVIMFVDSYDV 105 zebrafish
XP_014352218  32 DNLLVITVATRETDGFIRFMRTVRQFNYTVKVLGLGEEWKGGDVartvGGGQKVRWLKKEMQkyaDDEEKVVMFVDSYDV 111 coelacanth
GCF59940      38 GKLLVLTAATEETEGYQRFLRTVKYFNYTVKTLGLGEDWKGGDVartvGGGQKVRWLKAEMQkhaTEEDLIVMFVDSYDV 117 Paroedura picta
EHB01682      40 EKLLVITVATAETEGYRRFLQTAEFFNYTVRTLGLGKEWRGGDVartvGGGQKVRWLKKEMEkyaDQEDMIIMFVDSYDV 119 naked mole-rat
Feature 1                                                                                        
6WFV_A        98 ILAgsPTELLKKFVQSgSRLLFSAESFCWPEWGLAEQYPevgtGKRFLNSGGFIGFATTIHQIVRQWKyKDDDDDQLFYT 177 human
6FXX_A        94 ILAgsPTELLKKFVQSgSRLLFSAESFCWPEWGLAEQYPevgtGKRFLNSGGFIGFATTIHQIVRQWKyKDDDDDQLFYT 173 human
6FXK_A        94 ILAgsPTELLKKFVQSgSRLLFSAESFCWPEWGLAEQYPevgtGKRFLNSGGFIGFATTIHQIVRQWKyKDDDDDQLFYT 173 human
6FXM_A        94 ILAgsPTELLKKFVQSgSRLLFSAESFCWPEWGLAEQYPevgtGKRFLNSGGFIGFATTIHQIVRQWKyKDDDDDQLFYT 173 human
6FXR_A        94 ILAgsPTELLKKFVQSgSRLLFSAESFCWPEWGLAEQYPevgtGKRFLNSGGFIGFATTIHQIVRQWKyKDDDDDQLFYT 173 human
6FXT_A        94 ILAgsPTELLKKFVQSgSRLLFSAESFCWPEWGLAEQYPevgtGKRFLNSGGFIGFATTIHQIVRQWKyKDDDDDQLFYT 173 human
6FXY_A        94 ILAgsPTELLKKFVQSgSRLLFSAESFCWPEWGLAEQYPevgtGKRFLNSGGFIGFATTIHQIVRQWKyKDDDDDQLFYT 173 human
O60568       117 ILAgsPTELLKKFVQSgSRLLFSAESFCWPEWGLAEQYPevgtGKRFLNSGGFIGFATTIHQIVRQWKyKDDDDDQLFYT 196 human
NP_001080446 111 VISgsPTELLWKFQRFeHKVVFSAEGFCWPEWSLAESYPpitnGKRFLNSGGFIGFAPQLYQMVQLWKyKDNDDDQLFYT 190 African clawed ...
NP_001037808 106 ILAsgPVELLRKFSRFsHRVVFSAEGFCWPDQRLASKYPavhhGKRYLNSGGFIGFAPEIHAIVQQWKyKDDDDDQLFYT 185 zebrafish
XP_014352218 112 IFAsgPTELLWKFQQFkHKVVFSAEGFCWPNQKLVSKYPavqiGKRFLNSGGFIGYASHLYQIVQQWKfKDNDDDQLFYT 191 coelacanth
GCF59940     118 ILAgsPVELLRKFQKFkSNLVFSAESFCWPEWSLAEKYPpvdvGNRFLNSGGFIGYAPVIHRIVQLWKyKDDDDDQLFYT 197 Paroedura picta
EHB01682     120 ILAgsPTELLKKFVQSsSRLLFSAEGFCWPDWGLAEQYPevgtGKRFLNSGGFIGFAPTIHQIVHQWKyKDDDDDQLFYT 199 naked mole-rat
Feature 1                                                                                        
6WFV_A       178 RLYLDPGLREKLSLNLDHKSRIFQNLNGAL-------------------------------------------------- 207 human
6FXX_A       174 RLYLDPGLREKLSLNLDHKSRIFQNLNGAL-------------------------------------------------- 203 human
6FXK_A       174 RLYLDPGLREKLSLNLDHKSRIFQNLNGAL-------------------------------------------------- 203 human
6FXM_A       174 RLYLDPGLREKLSLNLDHKSRIFQNLNGAL-------------------------------------------------- 203 human
6FXR_A       174 RLYLDPGLREKLSLNLDHKSRIFQNLNGAL-------------------------------------------------- 203 human
6FXT_A       174 RLYLDPGLREKLSLNLDHKSRIFQNLNGAL-------------------------------------------------- 203 human
6FXY_A       174 RLYLDPGLREKLSLNLDHKSRIFQNLNGAL-------------------------------------------------- 203 human
O60568       197 RLYLDPGLREKLSLNLDHKSRIFQNLNGAL-------------------------------------------------- 226 human
NP_001080446 191 KIYLDESMREKFDITLDHKSNIFQNLNGAI-------------------------------------------------- 220 African clawed ...
NP_001037808 186 RIYLDKEKRRKFNMTLDHRSQIFQNLNGAI-------------------------------------------------- 215 zebrafish
XP_014352218 192 RVYLDPVQREKFDMTLDHKSRIFQNLNGAIgecsekqfpq-------------------------------------vtv 234 coelacanth
GCF59940     198 RIYLDPALREKHGITLDHKSKIFQNLNGAI-------------------------------------------------- 227 Paroedura picta
EHB01682     200 RLYLDPGLREKFSLNLDHKSRIFQNLNGALgeeeghpavsnkgsllrgswiagpwwswaglqltyvtffrhllqfysass 279 naked mole-rat
Feature 1                                        #                
6WFV_A       208 ------DEVVLKFDRNRVRIRNVAYDTLPIVVHGNGP---TKLQLNYLG 247 human
6FXX_A       204 ------DEVVLKFDRNRVRIRNVAYDTLPIVVHGNGP---TKLQLNYLG 243 human
6FXK_A       204 ------DEVVLKFDRNRVRIRNVAYDTLPIVVHGNGP---TKLQLNYLG 243 human
6FXM_A       204 ------DEVVLKFDRNRVRIRNVAYDTLPIVVHGNGP---TKLQLNYLG 243 human
6FXR_A       204 ------DEVVLKFDRNRVRIRNVAYDTLPIVVHGNGP---TKLQLNYLG 243 human
6FXT_A       204 ------DEVVLKFDRNRVRIRNVAYDTLPIVVHGNGP---TKLQLNYLG 243 human
6FXY_A       204 ------DEVVLKFDRNRVRIRNVAYDTLPIVVHGNGP---TKLQLNYLG 243 human
O60568       227 ------DEVVLKFDRNRVRIRNVAYDTLPIVVHGNGP---TKLQLNYLG 266 human
NP_001080446 221 ------DEVVLKFESNKVRARNVAYDTIPVVIHGNGP---TKLQLNYLG 260 African clawed frog
NP_001037808 216 ------EEVVLKFEKSRVRVRNVAYDTLPVVIHGNGP---TKLQLNYLG 255 zebrafish
XP_014352218 235 gifieqPTPFFPEFLERLSTLDYPQSKLHLFIHNNAVyheKHIQAFWEK 283 coelacanth
GCF59940     228 ------DEVVLKFEPTRVRARNVAYDTLPVVIHGNGP---TKLQLNYLG 267 Paroedura picta
EHB01682     280 skhessDEVVLKFDRNRVRIRNVAYDTLPVVVHGNGP---TKVPPSSLC 325 naked mole-rat

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap