6WFV,6FXX


Conserved Protein Domain Family
GT_LH

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cd22997: GT_LH 
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catalytic glycosyltransferase (GT) domain found in the lysyl hydroxylase (LH) family
The lysyl hydroxylase (LH) family includes LH1-3. LH1 (EC 1.14.11.4, also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 or PLOD1) and LH2 (EC 1.14.11.4, also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 or PLOD2) form hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens. These hydroxylysines may serve as sites of attachment for carbohydrate units and are essential for stability of the intermolecular collagen cross-links. LH1 is part of a complex composed of PLOD1, P3H3 and P3H4 that catalyzes hydroxylation of lysine residues in collagen alpha chains and is required for normal assembly and cross-linking of collagen fibrils. LH3 (EC 1.14.11.4/EC 2.4.1.50/EC 2.4.1.66), also called procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 (PLOD3), or multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3, is a multifunctional enzyme that catalyzes a series of essential post-translational modifications on Lys residues in procollagen. It converts collagen lysines into 1,2-glucosylgalactosyl-5-hydroxylysines through three consecutive reactions: hydroxylation of collagen lysines (LH activity), N-linked conjugation of galactose to hydroxylysines (GT activity), and conjugation of glucose to galactosyl-5-hydroxylysines (GGT activity). LH3 monomer encompasses three domains; the first two N-terminal domains (catalytic glycosyltransferase domain and accessory domain) show Rossmann-fold architectures reminiscent of glycosyltransferases, whereas the C-terminal domain is characterized by a double-stranded beta-helix (DSBH) fold, highly conserved among the 2-oxoglutarate, Fe2+-dependent dioxygenases. This model corresponds to the N-terminal catalytic glycosyltransferase (GT) domain, which is solely responsible for glycosyltransferase activities (both GT and GGT).
Links
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Statistics
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PSSM-Id: 438557
Aligned: 387 rows
Threshold Bit Score: 62.0272
Created: 13-Oct-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Mn binding siteUDP binding
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:Mn binding site [ion binding site]
Evidence:
  • Structure:6FXX; Homo sapiens lysyl hydroxylase LH3 binds Mn2+ ion; contacts at 4.0A
  • Structure:6WFV; Homo sapiens LH3 binds Mn2+ ion; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     #  
6WFV_A        21 LVITVATAe---tEGYLRFLRSAEFFn--yTVRTLGLGEEWrggdvartvgggQKVRWLKKEMekyadredMIIMFVDSy 95  human
6FXX_A        17 LVITVATAe---tEGYLRFLRSAEFFn--yTVRTLGLGEEWrggdvartvgggQKVRWLKKEMekyadredMIIMFVDSy 91  human
OLQ03465      72 HLMTFMFNi---qRHFAYLQVSAESQq--iFPQVMGIGKSKdwg------kmgDKINAIRAFAfsk--ddqDVMIVADAf 138 Symbiodinium mi...
XP_003074315 174 GVVIVTGHatdisKHASHWLASATHWg--lPARLSGHGTTWrn--------weEKTMGLKTNLlhm--ngdPVVVTSDTg 241 Ostreococcus tauri
KPI88925     154 HFVTLSTRt----DDFMHATTTAATMag-vPLNVIGVGWSWfa--------ftRRMEILRSFIdqdgvageDILISMDA- 219 Leptomonas seym...
XP_007515196 172 VVTAHATNl---kSNGWVILDSAKKNg--lEIVISGNGTTFhg--------faDKMMGLKAALhsi--pgnPIIVNADAt 236 Bathycoccus pra...
XP_002500118 201 KDLVVATHtt--dKDASKLFMASIHKhg-lAASVSGVGTWWhs--------heDKEIGLKASLlrlpadedPLVILADSd 269 Micromonas commoda
OLQ03467      37 HLMTFMFNm---hRSFAYLQVSAEANqmfpHVLGLGKGNSWgt---------mEKANAMRTFAltq--ndqDVLIYADAf 102 Symbiodinium mi...
XP_007512219 171 VVTAHATDm----NSFGWVIYDSAKKng-lEMVISGEGTQFhg--------faDKVIGLKAALham--pgnPIVVVADAs 235 Bathycoccus pra...
XP_015657476  89 HFVTISTRm----DDFAQATTTAATMag-vRLNVIGVGWNWfa--------ftRRMELLRSFIdqdnvdedDVLVSVDA- 154 Leptomonas pyrr...
Feature 1        #                                                                               
6WFV_A        96 DVILAgspTELLKKFVQSg------------------------sRLLFSAESF-----CWPEWGLAEQYPevg------- 139 human
6FXX_A        92 DVILAgspTELLKKFVQSg------------------------sRLLFSAESF-----CWPEWGLAEQYPevg------- 135 human
OLQ03465     139 DTLVLagqPEILRKFEELese--------------------sgrSIIFNAEVA-----CFPSSDSICEKTpaa------- 186 Symbiodinium mi...
XP_003074315 242 DVFFTcgqEELLKRFEASg------------------------aDIIASGETQ-----LYPEIKKYFNMRehtdwqnvkn 292 Ostreococcus tauri
KPI88925     220 DAILSg--EDVYESIAAFvastaasvdehdtysvrdirlrrrlpPVLFSAEYNcmhaqAYPSRHLCPTGYnvidemmnaw 297 Leptomonas seym...
XP_007515196 237 DVLLQcgpEEFQKRFEQAd------------------------aDFIFGGETQ-----LWPEIRKYFDMEdeqqfkrems 287 Bathycoccus pra...
XP_002500118 270 DSMFTcdaEEMLSRFEELd------------------------aDIVVGTETR-----CWPPEASHCGDGykhleegvra 320 Micromonas commoda
OLQ03467     103 DCLVLgsrSEILRKFEELese--------------------sgrSIVFGAEET-----CFPNSDGICEKTppa------- 150 Symbiodinium mi...
XP_007512219 236 DVFLQcsaSEFKDRFTKAe------------------------aDMVFGGETQ-----LWPEVSDYFKRDsekalknels 286 Bathycoccus pra...
XP_015657476 155 DAVFSg--EDLYDSLAAFvastaanatehetyrvrdirlgrrqpPVLFSAEYNcmhaqAYPSRHLCPTGYnvidqmmstw 232 Leptomonas pyrr...
Feature 1                                                                                        
6WFV_A       140 -----------------------tgKRFLNSGGFIGFATTIHQIVrqwky-------------------------kdddd 171 human
6FXX_A       136 -----------------------tgKRFLNSGGFIGFATTIHQIVrqwky-------------------------kdddd 167 human
OLQ03465     187 ----------------------khrWRYLNAGLMVGRAQAFKRILpeplqg------------------------eekev 220 Symbiodinium mi...
XP_003074315 293 nigki-----gkvkeaalgaelarpYRWANAGLLMGRKSALLRYIdfveksffendglsqtdtrfryactpfnhtkeear 367 Ostreococcus tauri
KPI88925     298 slva--------gaplpsehrqvnpFRYLNAGVVVARVWALRRVWaaaqafmssh---------------vpyegqewwc 354 Leptomonas seym...
XP_007515196 288 ltfgei----gkaagddveltgehpNVWANAGSFMGRKEELIKYIeatenrmmrhndwk-------eedgfgmtckpaat 356 Bathycoccus pra...
XP_002500118 321 gmevrselgrvessgdathetkpttRIWGDAGAIVGRRSALVKLLrefesfleinpkykadqgtgarwgafyksckpfgv 400 Micromonas commoda
OLQ03467     151 ----------------------khrWRYLNSGILVGRVHAFKTMLpkrs---------------------------eehv 181 Symbiodinium mi...
XP_007512219 287 hsfgdi----gmaegvtpinkndipNGWPNAGGWMARKEALLEYIssteermnkfstee-------wpgewgyqcrpdga 355 Bathycoccus pra...
XP_015657476 233 sqqa--------gvplpsahrrvnpFPYLNAGVVVARVWAIRRVWaasqafmssh---------------tfyegdewwc 289 Leptomonas pyrr...
Feature 1                                                                                        
6WFV_A       172 DQLFYTRLYLdpgl------------------------------------------------------reklSLNLDHKs 197 human
6FXX_A       168 DQLFYTRLYLdpgl------------------------------------------------------reklSLNLDHKs 193 human
OLQ03465     221 NDQWWWQIYRrdh---------------------------------------------------------peKILLDTEc 243 Symbiodinium mi...
XP_003074315 368 DLDIAAKFYDdqlclnaya--------------------------------------------mnraaardkSFKIDSDg 403 Ostreococcus tauri
KPI88925     355 DQSVLGSLYLqlrwweirsagldtatpqqlsnkt--------------meqclfqplvlpephrgphglpggLIGLDHDg 420 Leptomonas seym...
XP_007515196 357 TDEEFNNVFPgmrqfddqeclt--------------------------------------afqmqkliersqRHKLDADg 398 Bathycoccus pra...
XP_002500118 401 DTKAWREAVSarpprawigyddqmc---------------------------------lnrylierskakdvRVKLDRDg 447 Micromonas commoda
OLQ03467     182 NDQVWFQLYRrdn---------------------------------------------------------pdKVLLDTDc 204 Symbiodinium mi...
XP_007512219 356 TDADWNGKYAglrgfddqlcln--------------------------------------aynmaklrqgdrRHKLDADg 397 Bathycoccus pra...
XP_015657476 290 DQSVLGSLYLqlrwweiksfaldaapaqllstatqaeclfpplmlpephrgphglpggliglddagrfslviSTQMDQKg 369 Leptomonas pyrr...
Feature 1                                                                                        
6WFV_A       198 ----rIFQNLNga--------------lDEVVLKFDr------------------------------------------- 216 human
6FXX_A       194 ----rIFQNLNga--------------lDEVVLKFDr------------------------------------------- 212 human
OLQ03465     244 kllcnLFAVTEe----------------EGVTLEGR-------------------------------------------- 263 Symbiodinium mi...
XP_003074315 404 ----gILHSPGg----------------IDLRNMLRdp------------------------------------------ 421 Ostreococcus tauri
KPI88925     421 rfslvISMQMEpkgvlqiggnpttkttpPEAALAKYllgsgriedtltgtlr--------------------------ss 474 Leptomonas seym...
XP_007515196 399 s---iLFSAGG-----------------APMSQLGQd------------------------------------------- 415 Bathycoccus pra...
XP_002500118 448 ----tLVHAVGg---------------tSSQSYATDpktg---------------------------------------- 468 Micromonas commoda
OLQ03467     205 ----kLICTLLrl-------------qeDGVDVGVG-------------------------------------------- 223 Symbiodinium mi...
XP_007512219 398 s---iLFSTNGcp--------------vADTGKDSK-------------------------------------------- 416 Bathycoccus pra...
XP_015657476 370 -----VFQVGG-----------------TPITQSTQpedalatylrsggrvedgltgvprsghrvelvpragfdcggaag 427 Leptomonas pyrr...
Feature 1                                                       #    
6WFV_A       217 ------------nRVRIRNvay------------------dtlPIVVHGNGP 238 human
6FXX_A       213 ------------nRVRIRNvay------------------dtlPIVVHGNGP 234 human
OLQ03465     264 -------------RLHVQPtg--------------------tvPPLIHFASY 282 Symbiodinium microadriaticum
XP_003074315 422 ------------vTGRVYNkdt------------------gkaPCVWHFNNP 443 Ostreococcus tauri
KPI88925     475 hhvelvprpgfdcGAAVEQvsrppecayraavlgtpadaeavtPLIWHFAGK 526 Leptomonas seymouri
XP_007515196 416 ------------aNGMVYNkqt------------------gkaSCLWHFNNP 437 Bathycoccus prasinos
XP_002500118 469 ---------rpfwKATSKS------------------------PCVWHFNTP 487 Micromonas commoda
OLQ03467     224 -------------RLHVRPtg--------------------taPALVHFPGF 242 Symbiodinium microadriaticum
XP_007512219 417 -------------EKVYYKytg-------------------kaPCLWHMNNP 436 Bathycoccus prasinos
XP_015657476 428 hnaqairppecayRAAVLGvpgsa---------------eavtPLIWHFAGK 464 Leptomonas pyrrhocoris

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