1V54,2Y69,2OCC,5Z62,1OCC


Conserved Protein Domain Family
CcO_VIc

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cd22901: CcO_VIc 
Click on image for an interactive view with Cn3D
Cytochrome c oxidase subunit VIc
Cytochrome c oxidase subunit VIc (COX6c) is a subunit of the cytochrome c oxidase (CcO, also called complex IV or CIV), the terminal oxidase in the mitochondrial electron transport chain which drives oxidative phosphorylation. CcO is a multi-chain transmembrane protein complex located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 14 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 11 subunits are encoded within the nuclear genome. The VIc subunit is a single-pass membrane protein found only in eukaryotes and its specific function remains unclear.
Statistics
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PSSM-Id: 438623
Aligned: 26 rows
Threshold Bit Score: 81.1342
Created: 10-Mar-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 32 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:2OCC; Bos taurus cytochrome c oxidase subunit VIc interacts with other subunits of the complex, contacts 4A
  • Comment:Subunit VIc interacts with subunits 1, 2, 4 and 5A.
  • Citation:PMID 9624044

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             ## ## ### ### ### ### ### ### ##  ## ##  ##  #   #           
1V54_I         4 LAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIF 69  cattle
2OCC_I         4 LAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIF 69  cow
XP_789810      4 LPRPKMRGLLSSFLTRHFIIGSVLSLAGAGLVKVFLYDARKKLYTEFYKTYDAQADFERMRELGVF 69  purple urchin
ABF18537       8 IPKPVLRGLHNASIKRNLVVSGVLCVISVAAFNFLYVEPKKQAYADFYKTYDANKHFERMKDAGLL 73  yellow fever mosquito
NP_001285640   8 EFKFPMHDLHLKQTFRNVKMACTLALLAPLLFYTLHNNPRKRKYRNFYSTYDPMDAFDRMMSGGYL 73  fruit fly
NP_001245885   9 SAGPVLRGLHNATIKRNLAVSLGLTAVVTIAYKILVNDPKKAAYADFYSKYDANKSFERMKAAGRF 74  fruit fly
XP_967913      8 IPKPQMRGLLHSQIKRNLILTGISCTIAGLYMKFVFGNSRKNAYAEFYKNYDINKEFHRIRRKGLF 73  red flour beetle
RDD46176      43 AAKPQLRYLFRTEVLRDIFVAIGVGLVGGLVFRYTVQVPRIRNYENFYKNYNANDEALKLEKERDA 108 Trichoplax sp. H2
XP_004926147  34 RVKPIMRGMLHAQIKRTIASALILAAMGGAAFYFGVRLPKQKAYREYYAKGEFEDWADEMARKGLF 99  domestic silkworm
AAY66931       3 LARPQFHGLLKSYIRKHLIICLSLAGVGGVAWHYGVCEARKKAYADFYKTYDAAADNERMTKLGLF 68  black-legged tick

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