Conserved Protein Domain Family
ANKRD27_zf1

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cd22885: ANKRD27_zf1 
first Zn-fingernail found in ankyrin repeat domain-containing protein 27 (ANKRD27) and similar proteins
ANKRD27, also called VPS9 domain-containing protein, or VARP, is a multifunctional endosomal protein that acts as a regulatory/accessory factor for retromer-based coats. It may be a guanine exchange factor (GEF) for Rab21, Rab32 and Rab38 and may regulate endosome dynamics. It may also regulate the participation of VAMP7 in membrane fusion events and is involved in peripheral melanosomal distribution of TYRP1 in melanocytes. In addition, ANKRD27 participates in GLUT1 endosome-to-plasma membrane trafficking in a VPS29-dependent manner. ANKRD27 contains two conserved CHPLCxCxxC motifs which are referred to as Zn-fingernails. This model corresponds to the first Zn-fingernail of ANKRD27.
Statistics
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PSSM-Id: 439265
Aligned: 38 rows
Threshold Bit Score: 48.4055
Created: 4-Mar-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative VPS29CHPLCxCxxC
Feature 1:putative VPS29 binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens ANKRD27 (6TL0) binds VPS29 through its Zn-fingernail.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #######                                               
Q96NW4        429 KMCHPLCFCDDCEKLVSGrlnd---------------psvvTPFSRDDRGHTPLH 468  human
OWR45661      462 KLCHPLCTCKKCCSKISKnllk----------------tspTVYSRDGHGLTPLH 500  Danaus plexippus plexippus
XP_008553327  437 KLCHPLCRCEKCESSFTEiqlaq--------------ssrpSINSKDDSGRTALH 477  Microplitis demolitor
XP_014616283  428 PLCHPLCTCESCEVSLAKnrll----------------nrpTVSSKNEHGSTALH 466  Polistes canadensis
XP_014220416  457 KLCHPLCLCERCQRKMSSnkrfg-------------ldgtpSITARDERGRTCLH 498  Trichogramma pretiosum
XP_029671381  428 SLCHPLCTCASCERYWTNhr-------------------elSACPRDDRGLTSLH 463  Formica exsecta
TGZ56896      456 TLCHPLCTCASCERNWTRqr-------------------dlKAYPKDDKGLTPLH 491  Temnothorax longispinosus
XP_014217504  513 KLCHPLCTCKNCDRSLLLnsst----------------dltSAQWRDNRGRNCLH 551  Copidosoma floridanum
XP_004348666  775 TLCHPLCDCAKCQATLATvgrphdapdapvdddpidldssiTVYSRDGEGCTALH 829  Capsaspora owczarzaki ATCC 30864
PAA77563      479 TLCHPLCRCAKCEAALAAarlarlg----------daetaaSVEQRNERNWTPLH 523  Macrostomum lignano

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