6TL0


Conserved Protein Domain Family
ANKRD27_zf

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cd22883: ANKRD27_zf 
Click on image for an interactive view with Cn3D
Zn-fingernail found in ankyrin repeat domain-containing protein 27 (ANKRD27) and similar proteins
ANKRD27, also called VPS9 domain-containing protein, or VARP, is a multifunctional endosomal protein that acts as a regulatory/accessory factor for retromer-based coats. It may be a guanine exchange factor (GEF) for Rab21, Rab32 and Rab38 and may regulate endosome dynamics. It may also regulate the participation of VAMP7 in membrane fusion events and is involved in peripheral melanosomal distribution of TYRP1 in melanocytes. In addition, ANKRD27 participates in GLUT1 endosome-to-plasma membrane trafficking in a VPS29-dependent manner. ANKRD27 contains two conserved CHPLCxCxxC motifs which are referred to as Zn-fingernails.
Statistics
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PSSM-Id: 439264
Aligned: 5 rows
Threshold Bit Score: 48.4038
Created: 13-Oct-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
VPS29 bindingCHPLCxCxxC
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:VPS29 binding site [polypeptide binding site]
Evidence:
  • Structure:6TL0; Homo sapiens ANKRD27 in complex with VPS29, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #######                               
6TL0_B         23 EFCHPLCQCPKCAPAQKRlakvpasglgVNVTSQDGSSW 61   human
Q96NW4        429 KMCHPLCFCDDCEKLVSGrlndp-svvtPFSRDDRGHTP 466  human
Q96NW4        709 EFCHPLCQCPKCAPAQKRlakvpasglgVNVTSQDGSSP 747  human
XP_004992668  492 TGCHPLCTCYRCKPVSDV----------ALLRDAADRTP 520  Salpingoeca rosetta
XP_019850681  428 SLCHPLCHCEKCAPIVSNyhddp-arvsIYSRDSLKRTG 465  Amphimedon queenslandica

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