7BB3,7BB3,4RG5,4GLI


Conserved Protein Domain Family
SMN_C

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cd22852: SMN_C 
Click on image for an interactive view with Cn3D
C-terminal oligomerization domain of the Survival Motor Neuron family
The survival motor neuron (SMN) protein family includes metazoan SMN and fungal SMN-like protein 1 (SMN1). SMN forms the oligomeric core of a multiprotein complex, called the SMN complex, that functions in the assembly and biogenesis of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. It is expressed in all tissues of metazoan organisms, but is particularly expressed at high levels in motor neurons. Schizosaccharomyces pombe SMN1 is essential for viability and has been shown to interact with human SMN and Sm proteins. Loss of function mutations in the SMN gene of humans cause spinal muscular atrophy (SMA), a leading genetic cause of infant mortality. While most eukaryotes have a single copy of the SMN gene, humans have two; the telomeric SMN1 gene is deleted or mutated in SMA patients, whereas the centromeric SMN2 gene is unaffected and can be present in multiple copies. SMN has three highly conserved domains: a short N-terminal region that is responsible for binding with high affinity to Gemin2; a central Tudor domain that recognizes symmetric dimethylarginine (sDMA) modifications in arginine/glycine rich regions of a number of proteins involved in RNA processing, including the Sm proteins; and a C-terminal domain called the YG-box that is primarily responsible for oligomerization. This model represents the C-terminal oligomerization domain of SMN family proteins.
Statistics
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PSSM-Id: 439368
Aligned: 67 rows
Threshold Bit Score: 35.8998
Created: 24-Feb-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:this region is also called the YG-box, a highly conserved oligomerization domain that contains a (YxxG)3 motif
  • Comment:the SMN YG-box forms helical oligomers similar to the glycine zippers found in transmembrane channel proteins
  • Structure:7BB3: Schizosaccharomyces pombe survival motor neuron-like protein 1 forms a homodimer; contacts at 4A
  • Structure:4RG5: Escherichia coli maltose-binding periplasmic protein/human SMN chimera forms a homodimer; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  ##  ## ### ### ### ## 
7BB3_A        37 YDETYKKLIMSWYYAGYYTGLAEGLAKSE 65  Schizosaccharomyces pombe 972h-
XP_016645956 106 SSQPAISAPPGLLGSGYYTGLYEGQQKRK 134 Scedosporium apiospermum
RDX51476     242 QDEAFSRAMTAMYWSGYWTAVYHARRNES 270 Polyporus brumalis
KIW67508     194 QDQTLENIKMAYYWAGYYSGLYDGQRQAQ 222 Phialophora americana
OHT09905     124 SDPDRMRLLHSWYWAGYYTGLADGKRIAN 152 Tritrichomonas foetus
ORY98348     236 QQGNGNEAFTNMIMAWYYSGYYTGLYQAQ 264 Absidia repens
GBB85121     324 TGFDDDEALTNLIMAWYYSGYYTGLYHGR 352 Rhizophagus clarus
RHZ78804     348 PPMIDDDSLKDLLMAWYFSGYYTGYYQAK 376 Diversispora epigaea
ORX48662     363 TDDALMNMMMAWYWAGYYTCNYYDTLNNN 391 Piromyces finnis
RKP14407     181 PSQLGDESLSNMLMAWYYAGYYTAQYQAS 209 Piptocephalis cylindrospora

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