6Z2L


Conserved Protein Domain Family
Gal_Rha_Lectin_like-P113_rpt2

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cd22848: Gal_Rha_Lectin_like-P113_rpt2 
Click on image for an interactive view with Cn3D
second galactose/rhamnose binding lectin-like domain found in Plasmodium falciparum P113 and similar proteins
P113 is an abundant glycosylphosphatidylinositol (GPI)-anchored merozoite surface protein that tethers the RH5:CyRPA:RIPR complex to the merozoite surface. The N-terminal region of P113 contains two closely interacting domains, which resemble the galactose/rhamnose-binding lectin domains found in proteins such as sea urchin egg lectin (SUEL), plant beta-galactosidases, mammalian latrophilins, and catfish rhamnose-binding lectin (SAL) eggs. Due to the lack of rhamnose-binding key residues, the galactose/rhamnose-binding lectin-like domains of P113 do not form a binding pocket for rhamnose. Therefore, P113 is unlikely to act as a rhamnose-binding lectin. This model corresponds to the second galactose/rhamnose binding lectin-like domain of P113.
Statistics
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PSSM-Id: 438705
Aligned: 4 rows
Threshold Bit Score: 132.692
Created: 2-Sep-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Fab fragment
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:Fab fragment binding site [polypeptide binding site]
Evidence:
  • Structure:6Z2L: Plasmodium falciparum P113 in complex with Fab fragments of monoclonal antibody P3.2; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                  ####  #                           ### #
6Z2L_A        102 SFILDea-fIQYFFFIXNxNEEPVICKDGNINIKSALLHSPFCEIKLXDISEYIRKXCDNNKECLIDPLDVQKNLLNEED 180  Plasmodium fa...
SCM17896      127 LLEFDnnnhVIYNFLLNNkNNDKIVCKNSNIYINNATIHYTFSDIKFKDVTSYIKEKCNEKTNCVINPYSIQTDILNEKN 206  Plasmodium be...
SOS81044      124 SFILDea-fIQYFFFIKNkNEEPVICKDGNINIKSALLHSPFCEIKLKDISEYIRKKCDNNKECLIDPLDVQKNLLNEED 202  Plasmodium sp...
XP_028528529  121 SFLLEel-nTQYFFFIKNkNNDPVVCQSGIINVNSATLHSPFCEIKLRDISSHIRKECDDNKDCLINPIELPKSLLGDDN 199  Plasmodium ga...
Feature 1         ###  #           
6Z2L_A        181 PCYINNAYVSVNVVCNK 197  Plasmodium falciparum 3D7
SCM17896      207 DAYLLNSYISISFACVK 223  Plasmodium berghei
SOS81044      203 PCYINNSYVSVNVVCNK 219  Plasmodium sp. gorilla clade G1
XP_028528529  200 PCYINNSYVSLNIICRK 216  Plasmodium gallinaceum

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