6Z2L


Conserved Protein Domain Family
Gal_Rha_Lectin_like_P113_rpt1

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cd22847: Gal_Rha_Lectin_like_P113_rpt1 
Click on image for an interactive view with Cn3D
first galactose/rhamnose binding lectin-like domain found in Plasmodium falciparum P113 and similar proteins
P113 is an abundant glycosylphosphatidylinositol (GPI)-anchored merozoite surface protein that tethers the RH5:CyRPA:RIPR complex to the merozoite surface. The N-terminal region of P113 contains two closely interacting domains, which resemble the galactose/rhamnose-binding lectin domains found in proteins such as sea urchin egg lectin (SUEL), plant beta-galactosidases, mammalian latrophilins, and catfish rhamnose-binding lectin (SAL) eggs. Due to the lack of rhamnose-binding key residues, the galactose/rhamnose-binding lectin-like domains of P113 do not form a binding pocket for rhamnose. Therefore, P113 is unlikely to act as a rhamnose-binding lectin. This model corresponds to the first galactose/rhamnose binding lectin-like domain of P113.
Statistics
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PSSM-Id: 438704
Aligned: 3 rows
Threshold Bit Score: 97.4588
Created: 2-Sep-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Fab fragment
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:Fab fragment binding site [polypeptide binding site]
Evidence:
  • Structure:6Z2L: Plasmodium falciparum P113 in complex with Fab fragments of monoclonal antibody P3.2; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               # #       # #                                         
6Z2L_A      2 VHNDVIKFGEENSLKCsQGNLYVLHCEVQCLNGNNEIIHKRCNDDIEKKCNGNNKCIYFFEYELRKKTQSFRNKNSIEIS 81  Plasmodium falcipa...
SCM02496   25 AHTSVSKFGSENTLKCpKGDVYNLQCQIKCMNSNNEIIYKECLDEVEKKCKDKKTCSYYFDYIFNKKFYKLRNSSSIYVD 104 Plasmodium chabaud...
SCM04865   25 AHTSVSKFGSENTLKCpKGDVYNLQCQIKCMNSNNEIIYKECLDEVEKKCKDKKTCSYYFDYIFNKKFYKLRNSSSIYVD 104 Plasmodium chabaud...
Feature 1           # # #       
6Z2L_A     82 ECVESEQNEVKTSTTCLL 99  Plasmodium falciparum 3D7
SCM02496  105 ECIDSNENEIKNTFTCAL 122 Plasmodium chabaudi chabaudi
SCM04865  105 ECIDSNENEIKNTFTCAL 122 Plasmodium chabaudi chabaudi

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