2JXA,2JX9,6SKA


Conserved Protein Domain Family
Gal_Rha_Lectin_LPHN1

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cd22844: Gal_Rha_Lectin_LPHN1 
Click on image for an interactive view with Cn3D
galactose/rhamnose binding lectin domain found in latrophilin-1 and similar proteins
Latrophilin-1 (LPHN1), also called adhesion G protein-coupled receptor L1 (ADGRL1), or calcium-independent alpha-latrotoxin receptor 1 (CIRL-1), or lectomedin-2, is a brain-specific calcium-independent receptor that mediates the effect of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. This model corresponds to a galactose/rhamnose-binding lectin domain found at the N-terminus of LPHN1.
Statistics
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PSSM-Id: 438701
Aligned: 9 rows
Threshold Bit Score: 188.723
Created: 4-Jan-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:rhamnose binding site [chemical binding site]
Evidence:
  • Structure:2JXA: Mus musculus latrophilin-1 in complex with rhamnose; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #                    #             #                                   # 
2JXA_A          7 MRRELACEGYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDaFPDP 86   house mouse
2JX9_A          7 MRRELACEGYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDaFPDP 86   house mouse
6SKA_D          1 MRRELACEGYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDaFPDP 80   Mus musculus
O94910         35 MRRELACEGYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDaFPDP 114  human
XP_007907566   35 MRRELACEGYPIELRCPGSDVIMIESANYGRTDDKICDADPFQMENVDCYLPDAFKIMSQRCNNRTQCVVVAGSDvFPDP 114  elephant shark
XP_014343826   31 MRRELACEGYPIELRCPGSDVIMIETANYGRTDDKICDADPFQMENVQCYLPDSYKIMSQRCNNRTQCVVVAGSDaFPDP 110  coelacanth
XP_018109118   35 MRRELACEGYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDsFPDP 114  African clawe...
XP_021330395   35 MRRELACEGYPIELRCPGSDVIMIETANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDvFPDP 114  zebrafish
ETE73571      141 VRRELACEGYPIELRCPGSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGSDaFPDP 220  king cobra
Feature 1         ######           
2JXA_A         87 CPGTYKYLEVQYDCVPY 103  house mouse
2JX9_A         87 CPGTYKYLEVQYDCVPY 103  house mouse
6SKA_D         81 CPGTYKYLEVQYDCVPY 97   Mus musculus
O94910        115 CPGTYKYLEVQYDCVPY 131  human
XP_007907566  115 CPGTYKYLEIQYECVPY 131  elephant shark
XP_014343826  111 CPGTYKYLEIQYECVPY 127  coelacanth
XP_018109118  115 CPGTYKYLEVQYDCVPY 131  African clawed frog
XP_021330395  115 CPGTYKYLEIQYECVPY 131  zebrafish
ETE73571      221 CPGTYKYLEVQYDCVPY 237  king cobra

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