Conserved Protein Domain Family
Gal_Rha_Lectin_RBL_rpt3

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cd22837: Gal_Rha_Lectin_RBL_rpt3 
third galactose/rhamnose binding lectin domain found in Silurus asotus rhamnose-binding lectin (RBL) and similar proteins
RBL, also known as Silurus asotus (catfish) roe lectin (SAL), is a lectin that binds L-rhamnose. It also binds monosaccharides possessing steric similarity to the hydroxyl group orientation at C2 and C4 of the pyranose ring structure of L-rhamnose, such as L-mannose and L-lyxose. RBL does not require a Ca2+ ion or free thiol group for its agglutination activity. RBL contains three galactose/rhamnose-binding lectin domains. This model corresponds to the third one.
Statistics
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PSSM-Id: 438694
Aligned: 8 rows
Threshold Bit Score: 120.223
Created: 29-Jan-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative sugar
Feature 1:putative sugar binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                                                                      #    
Q9PVW8        216 MVVCEg-gSASINCg-aQTIKTIWANYGR--TDSTVCSTGRpgsqllnTNCYtsdtLNKVAAGCDHlSTCTIPANNnf-f 290  Amur catfish
BAE02882      136 VIICEn-dLAQLQCddpERINVLSANYGR--HDSTTCSEGRpvsdlmrTDCSmd-tDSTISADCSGaHTCYIVANNdwlg 211  Nuchequula nu...
XP_030833453   43 LILCQn-dSGNIDCs-pGTISIIDSQYGRsaTGSVACDHRSil----tTNCVsd-eVTYARSQCQDqQTCALQCSFs--- 112  Strongylocent...
OWF53527       26 IHVCEg-dEKIITCd--RGIEVVSARYGR--FDRVTCLHTAms----kVGCFde-vLAKILSKCEGkATCALSPSNte-y 94   Yesso scallop
OWF55813        7 VAVCEq-kTTTITCs-aEEINVISARYGR--FDIVTCEHPAms----qVGCGadgvLDNIQDLCQGeTSCELAASNsi-y 77   Yesso scallop
XP_021360604   29 VLICEn-eSATLSCslmEVVVIQSAFYGR--KNQQTCVRDGqsm--kdTACSssvaFARYKALCAEkQTCTVTASNsv-t 102  Yesso scallop
XP_002126259  148 ATICEn-sQSTISCeqgSTINVLDSFYGR--IDRTTCPSGNty----tTSCKavhsPIYIRGLCQSrKTCTIRATNsv-f 219  vase tunicate
XP_030840804  718 IDICEgkdEPRITCsagQTISICSSIYGR--SDTTTCAKTRpat-tsnVDCMsl-nPLYVRTTCQGeQSCTVNAVNsvlg 793  Strongylocent...
Feature 1          # ######        
Q9PVW8        291 GDPCPNTYKYLRIVYAC 307  Amur catfish
BAE02882      212 GDPCSDTFKYLEVTYAC 228  Nuchequula nuchalis
XP_030833453  113 YDPCPNTYKYLNVTYSC 129  Strongylocentrotus purpuratus
OWF53527       95 GDPCPGTFKYLKVQFNC 111  Yesso scallop
OWF55813       78 GDPCPNTFKYLEVTYSC 94   Yesso scallop
XP_021360604  103 GDPCRGTYKYARISYTC 119  Yesso scallop
XP_002126259  220 GDPCYGTYKYVQIKYVC 236  vase tunicate
XP_030840804  794 GDPCRGTYKYLHIDYRC 810  Strongylocentrotus purpuratus

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