Conserved Protein Domain Family
Gal_Rha_Lectin_RBL_rpt2

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cd22836: Gal_Rha_Lectin_RBL_rpt2 
second galactose/rhamnose binding lectin domain found in Silurus asotus rhamnose-binding lectin (RBL) and similar proteins
RBL, also known as Silurus asotus (catfish) roe lectin (SAL), is a lectin that binds L-rhamnose. It also binds monosaccharides possessing steric similarity to the hydroxyl group orientation at C2 and C4 of the pyranose ring structure of L-rhamnose, such as L-mannose and L-lyxose. RBL does not require a Ca2+ ion or free thiol group for its agglutination activity. RBL contains three galactose/rhamnose-binding lectin domains. This model corresponds to the second one.
Statistics
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PSSM-Id: 438693
Aligned: 23 rows
Threshold Bit Score: 130.099
Created: 7-Jan-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative sugar
Feature 1:putative sugar binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                                                   #    
Q9PVW8       118 GNYAVICEHGYSTLDCGn-DAILIVNANYGRASsQICSNGLpngltqNTNCYaaNTLTTVAGLCNGkKSCTVEALNtIFS 196 Amur catfish
XP_030641115  99 TQTSVTCEGGYSTLDCGs-DVIEIISANYGRTNtTICSTGRpkyqvtKSNCFaqNTVAKVAEQCDGkSQCSVRASNsVFS 177 milkfish
AAI50383     137 IRSSAVCENAIANFKCEdgSLIHIHAANYGRTDgSTCAAGRpasqtaKTNCYasNSQTLVANACEGkNSCSISASNgVFS 216 zebrafish
XP_016429603 215 VRSSVICELANNTLICDhgTVIRIHSANYGRTDsSTCSTGRpasqlaKTDCYasNSQAIATNVCEGkNRCSLVASNgIFS 294 Sinocyclocheilu...
AHJ14698     118 AETTVICEHSYSTLECAqgGYLQIINANFGRSDsTTCSSGLpsgltkKTNCYasNTLSTLATLCNNqQSCTVEASStIFS 197 channel catfish
TRY54869     142 IRSVTTCEGGSAVLNCAlgQVIHVHSANYGRTDsSLCASGRppsevsRTDCYasNSLTLVSNGCEGtSSCSIVASNsVFS 221 Danionella tran...
XP_030641116 123 ARVSVACEGEYSTLDCGs-DVIQINSANYGRTDsTTCTLGWpahqisNTNCFarNTLSLIAEQCDGqNSCNVYASNsVFS 201 milkfish
XP_026055663  22 AKRAVVCEGGFMKLRCLs-GVIKINKANYGRTDrTTCTRGIldvhtsNMNCFqrSSLRIMSHRCDArKRCSVHVANtVFS 100 goldfish
XP_031422832  19 EARGAVCEGRTAHLPCEr-GFIKLISASYGRSDrTTCSSGRpsnqlsNTQCHqyRSRRIMSDRCDGmSSCTVPVTNsVFS 97  Atlantic herring
AAI33979     120 IRSVTACEGTNAVLKCGvgSYIQVESTNYGRTDsSTCSAGRpasqltKTNCFssTSDAVVADACNRkNTCTVSASNdVFG 199 zebrafish
Feature 1        # ######        
Q9PVW8       197 DPCSGTVKYLTVTYIC 212 Amur catfish
XP_030641115 178 DTCAGTYKYLNVTYSC 193 milkfish
AAI50383     217 DPCYGTYKYLYTAYSC 232 zebrafish
XP_016429603 295 DPCPNTFKYLYVLYSC 310 Sinocyclocheilus rhinocerous
AHJ14698     198 DPCPNTAKYLSVSYIC 213 channel catfish
TRY54869     222 DPCVGTFKYLYISYTC 237 Danionella translucida
XP_030641116 202 DPCVHIYKYLQISYFC 217 milkfish
XP_026055663 101 DPCAWTYKYLDVDFIC 116 goldfish
XP_031422832  98 DPCRGTYKYLDVSFTC 113 Atlantic herring
AAI33979     200 DPCYVTYKYLYITYSC 215 zebrafish

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